Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., Putrescine-binding periplasmic protein SpuD from Xanthobacter sp. DMC5

 Score =  174 bits (442), Expect = 2e-48
 Identities = 100/351 (28%), Positives = 179/351 (50%), Gaps = 27/351 (7%)

Query: 14  VASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKLLKGTGY 73
           VA++Q   ++ +NV+ W  Y+    L+ F ++ G+ + Y  F++NE + TKL L   TGY
Sbjct: 19  VATAQ---DKVVNVFNWSDYIDPTVLEDFTKETGIKVRYDVFDSNEVLETKL-LAGKTGY 74

Query: 74  DVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLG--LAHDPQNKFSLPYIWGITG 131
           DVV  S  F+++  + G+   +D +++PN++ A P V      +DP N  ++ Y+WG TG
Sbjct: 75  DVVVPSGSFLQRQIKAGVFIPLDKSKLPNLQYAWPEVTQRLAVYDPGNAHAVNYMWGTTG 134

Query: 132 LYYNSSTLPNGITKWA-DLWDKQYEQQVM---------LIDDIRDVFGMALKLNGFSINT 181
           + YN   +   +     + WD  ++ +++         ++D   +V   A+K  G   N+
Sbjct: 135 IGYNVDKVKERLGDIPLNTWDIIFKPEILSKLKDCGVYVLDGPEEVIPTAMKYLGLDPNS 194

Query: 182 KNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEMPE---- 237
           KN E+I KA E L+ ++  +  ++S         G+  + + W+G+ YQ +    E    
Sbjct: 195 KNPEDIAKAGELLMTIRPYIKKFDSSGYINALARGDICIALGWSGDVYQAKTRAQEAAKK 254

Query: 238 -------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYAS 290
                  + +V+P+EGA++W DNF IP  +KNI  A  FIN+M +PE  A+    + YA+
Sbjct: 255 TKKKPVNVDYVLPKEGALMWFDNFAIPKDAKNIDNALAFINYMMKPEVAAKNSNFISYAN 314

Query: 291 ATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341
                +  +  E+ DNP+I+P+ E   +   +    P    +  K W   +
Sbjct: 315 GNLASQKFIDKEIMDNPSIYPTKEVFDRLFIVTTNEPPVQRVITKTWNTFK 365