Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  141 bits (355), Expect = 3e-38
 Identities = 88/360 (24%), Positives = 181/360 (50%), Gaps = 22/360 (6%)

Query: 2   KTFIKGLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESM 61
           KT +   ++ A+  ++Q   ++ L+VY W  Y+   ++  FE++ G+ + Y  F++NE++
Sbjct: 6   KTLLALSLMGAMAGAAQA-DDKVLHVYNWSDYIAPDTIANFEKESGIKVVYDVFDSNETL 64

Query: 62  YTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAH--DPQN 119
             KL L   +GYD+V  S  F+ K  + G+  E+D +++ N  +   ++L      DP N
Sbjct: 65  EAKL-LAGKSGYDIVVPSNNFLAKQIKAGVYQELDKSKLSNYDNLNKSLLKAVSVSDPDN 123

Query: 120 KFSLPYIWGITGLYYNSSTLPN--GITKWADLWDKQYEQQ---------VMLIDDIRDVF 168
           K + PY+WG  G+ YN   +    G+ K  D WD   + +         V  +D   ++ 
Sbjct: 124 KHAFPYMWGSIGIGYNPEKVKAALGVDK-IDSWDVLLKPENIAKLKSCGVSFLDSPTEML 182

Query: 169 GMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNA 228
            +AL   G   +T+ + ++K+A +  + ++ ++  ++S        +G   + + ++G+ 
Sbjct: 183 PVALHYLGLPTDTQKKADLKQAEDLFLKIRPSIGYFHSSKYISDLANGNICVAVGYSGDI 242

Query: 229 YQGQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEI 282
            Q +    E      + + +P+EGA  + D   IP  ++N+  A+KF+N++ +P+  AEI
Sbjct: 243 EQAKSRAAEAGGKVKVAYDIPKEGAGSFFDMVAIPKDAENVDAAYKFMNYLLKPQVMAEI 302

Query: 283 VQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN 342
             S+ + +  +   AL+  E+  +P I+P  +   K   I D+   T     + W ++++
Sbjct: 303 TNSVHFPNGNEKATALVDKEITSDPGIYPPADVQAKLYAIADLPAATQREMTRSWTKIKS 362