Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  154 bits (389), Expect = 3e-42
 Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 21/353 (5%)

Query: 8   LVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKL 67
           LV + +  +  V A  T+++Y W  Y+   +L  FE+  G+   Y  F++NE++  KL L
Sbjct: 11  LVGAGITLTLSVQAAPTVHIYNWSDYIGTDTLANFEKASGIKPVYDVFDSNETLEGKL-L 69

Query: 68  LKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDPQNKFSLPY 125
              TGYDVV  S +F+ K  + G   ++D + + N  +  P +L     +DP N++++PY
Sbjct: 70  AGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLTNYANLDPALLKRLEKNDPGNQYAVPY 129

Query: 126 IWGITGLYYNSSTLP-----NGITKWADLWDKQYEQQ-----VMLIDDIRDVFGMALKLN 175
           +WG  G+ YN          + I  WA L++ +  ++     V  +D   ++    L   
Sbjct: 130 LWGTNGIGYNGDKGKEVLGVDHIDSWAVLFEPENMKKLATCGVSFMDSADEMLPAVLNYM 189

Query: 176 GFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEM 235
           G + N+ N ++ KKA E L+ ++  V  ++S        +G   +   ++G+ +Q +   
Sbjct: 190 GLNPNSTNPDDYKKAEEKLLKVRPYVTYFHSSKYISDLANGNICVAAGFSGDVFQAKARA 249

Query: 236 PE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYA 289
            E      + + +P+EG  LW D   IP  + N+  AH FIN++ QPE  A++   +GYA
Sbjct: 250 AEAGKGVNIAYTIPKEGGNLWFDVLAIPKDATNVKEAHAFINYLLQPEVIAQVSDYVGYA 309

Query: 290 SATKGGRALLPAELRDNPTIFPSDEDMKKGEFIN-DVGPETLAIYEKYWQRLR 341
           +   G   L+   +R +  ++P    + +  F+N ++ P+   +  + W +++
Sbjct: 310 NPNPGADKLMEQSIRTDEAVYPPQAVLDR-TFVNFELPPKVQRLMTRSWTKVK 361