Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  149 bits (375), Expect = 1e-40
 Identities = 88/329 (26%), Positives = 168/329 (51%), Gaps = 20/329 (6%)

Query: 9   VLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKLL 68
           +L  ++ +S   A +T+ +Y W  Y+   + K F+++ G+   Y  +++NE++  KL   
Sbjct: 6   LLPLMLVASIGQAAETVKIYNWSDYIAPDTTKNFQKETGIGFTYDVYDSNETLDGKLMTG 65

Query: 69  KGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDPQNKFSLPYI 126
           K +GYDVVF S +F+ +  + G L ++D +Q+PN K+  P +L     +DP N    PY+
Sbjct: 66  K-SGYDVVFPSNHFMARQIQGGALKKLDKSQLPNWKNLNPVLLKALENNDPGNAHGFPYL 124

Query: 127 WGITGLYYNSSTLPN--GITKWADLWDKQYEQQ---------VMLIDDIRDVFGMALKLN 175
           WG TG+ YN   +    G     D WD  ++ +         V ++D+  ++   AL   
Sbjct: 125 WGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPENMAKLQKCGVAILDNGPELLPAALNYL 184

Query: 176 GFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEM 235
           G   ++K  E+ KKA + L+ ++  V  ++S        +G+  + + ++G+  Q +   
Sbjct: 185 GLPHHSKKPEDYKKAEDLLMKVRPYVAYFHSSKYTADLANGDICVAVGFSGDILQAESRA 244

Query: 236 PELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYA 289
            E K      + +P+EGA +W D   +P+ + N    + F+N++ +P+  A I   + YA
Sbjct: 245 KEAKNGVNIGYNIPKEGAAIWFDMVAMPADAPNEAAGYAFMNYLLRPQVMASITNYVHYA 304

Query: 290 SATKGGRALLPAELRDNPTIFPSDEDMKK 318
           +  +   +L+   ++ +  I+PS E M K
Sbjct: 305 NGNQAADSLVDPAIKADTKIYPSPEMMGK 333