Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  168 bits (426), Expect = 2e-46
 Identities = 104/357 (29%), Positives = 182/357 (50%), Gaps = 21/357 (5%)

Query: 5   IKGLVLSAVVA--SSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMY 62
           +K L   A+VA  SS   A  T++VY W  Y+ E +L  F+ + G+   Y  F++NE++ 
Sbjct: 4   VKQLFPLALVAAFSSASQAAPTVSVYNWTDYIGETTLADFQAKTGIKPIYDVFDSNETLE 63

Query: 63  TKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDPQNK 120
            KL L   TGYDVV  S +F+ +  + G   ++D  Q+PN K+  P +L L   +DP N 
Sbjct: 64  GKL-LAGRTGYDVVVPSNHFLARQVKAGAFLKLDRAQLPNFKNLDPKLLKLLEKNDPGNA 122

Query: 121 FSLPYIWGITGLYYNSSTLP-----NGITKWADLWDKQYEQQ-----VMLIDDIRDVFGM 170
            S+PY+WG  G+ YN   +      + I  WA L++ +  ++     V  +D   ++F  
Sbjct: 123 HSVPYLWGTNGIGYNVDKVKEVLGIDAIDSWAVLFEPENIKKLNQCGVAFLDSADELFPA 182

Query: 171 ALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQ 230
            L   G    ++N E+ K+A   L+ L+  +  ++S        +G   +   ++G+ +Q
Sbjct: 183 ILNYMGKDPRSENPEDYKQAEAKLLTLRPYITYFHSSKYISDLANGNICVAFGYSGDVFQ 242

Query: 231 GQVEMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQ 284
                 E K      + +P+EG+ LW D   IP+ + +   AH FIN++  P+  A++  
Sbjct: 243 AANRAKEAKNGVKIAYSIPKEGSNLWFDLLAIPADASHPKEAHAFINYLLDPQVIAKVSA 302

Query: 285 SLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341
           S+GYA+A    +A +  EL +NP ++PS + + K        P T+ +  + W +++
Sbjct: 303 SVGYANANPAAKAFMDPELVNNPEVYPSQDVLDKLYISTTPTPATMRLMTRAWSKVK 359