Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

 Score =  148 bits (374), Expect = 2e-40
 Identities = 91/361 (25%), Positives = 180/361 (49%), Gaps = 23/361 (6%)

Query: 2   KTFIKGLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESM 61
           KT +   ++ A+ ++ Q   ++ LNVY W  Y+   ++  FE+Q G+ + Y  F++NE++
Sbjct: 6   KTLLAAALMGAMASAVQA-EDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSNETL 64

Query: 62  YTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVL---GLAHDPQ 118
             KL L   +GYD+V  S  F+ K  + G+  E+D +++PN K+  P +L   G A D  
Sbjct: 65  EAKL-LAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASDKD 123

Query: 119 NKFSLPYIWGITGLYYNSSTLPN--GITKWADLWDKQYEQQ---------VMLIDDIRDV 167
           NK + PY+WG  G+ YN   +    G+ K  D WD  ++ +         V  +D   ++
Sbjct: 124 NKHAFPYMWGSIGIGYNPEKVKAALGVDK-IDSWDVVFKPENIAKLKSCGVSFLDAPTEM 182

Query: 168 FGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGN 227
              AL   G   ++  +E++K A +  + ++ ++  ++S        +G   + + ++G+
Sbjct: 183 LPAALHYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVGYSGD 242

Query: 228 AYQGQVEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAE 281
             Q +    E      + +V+P+EGA  + D   IP  +++   A++F+NF+ QPE  AE
Sbjct: 243 LEQSKARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMAE 302

Query: 282 IVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341
           I  ++ + +        +  ++  +P+I+P  E  K+   I         +  + W +++
Sbjct: 303 ITNAVRFPNGNAAATPFVDKDITSDPSIYPPAEVKKQLYAIAAPDASVQRVITRSWTKIK 362

Query: 342 N 342
           +
Sbjct: 363 S 363