Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

 Score =  157 bits (398), Expect = 3e-43
 Identities = 94/361 (26%), Positives = 181/361 (50%), Gaps = 20/361 (5%)

Query: 1   MKTFIKGLVLSA-VVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNE 59
           +  F K L+  A +  +  V A  T++ Y W  Y+   +L  FE+  G+      F++NE
Sbjct: 3   ISVFRKALMAGAGLTLACSVQAAPTVHFYNWSDYIGPTTLADFEKATGIKPVQDVFDSNE 62

Query: 60  SMYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HDP 117
           ++  KL L   TGYDVV  S +F+ K  + G   ++D N +PN  +  P ++     +DP
Sbjct: 63  TLEGKL-LAGNTGYDVVVPSNHFLGKQIKAGAFQKLDKNLLPNYSNLDPALMKRLEKNDP 121

Query: 118 QNKFSLPYIWGITGLYYNSSTLP-----NGITKWADLWDKQYEQQ-----VMLIDDIRDV 167
            N++++PY+WG  G+ YN   +      + I  WA L++ +  ++     V  +D   ++
Sbjct: 122 GNQYAVPYLWGTNGIGYNVDKVKAALGVDTIDSWAVLFEPENMKKLSKCGVAFLDSADEM 181

Query: 168 FGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGN 227
               L   G + N+ + ++  KA + L+A++  V  ++S        +G+  +   ++G+
Sbjct: 182 LPAVLNYMGLNPNSTDPKDYAKAEQKLLAVRPYVTYFHSSKYITDLANGDICVAAGFSGD 241

Query: 228 AYQGQVEMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAE 281
            +Q +    E K      + +P+EG  LW D   IP  +KN+  AH FIN++ +PE  A+
Sbjct: 242 VFQAKARAEEAKKGVNLAYAIPKEGGNLWFDVLAIPKDAKNVKEAHAFINYLLKPEVIAQ 301

Query: 282 IVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341
           +   +GYA+      AL+   +R +  ++P  E + K    +++ P+   +  + W +++
Sbjct: 302 VSDYVGYANPNPKAGALMDQAVRTDAAVYPPQEVLDKMFVNSELPPKVQRLMTRSWTKVK 361

Query: 342 N 342
           +
Sbjct: 362 S 362