Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  151 bits (381), Expect = 3e-41
 Identities = 89/310 (28%), Positives = 162/310 (52%), Gaps = 20/310 (6%)

Query: 24  TLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKLLKGTGYDVVFASAYFI 83
           ++++Y W  Y+   ++K F+++ GV++ Y  F+N+E M +KL +   +GYDVV ASA  +
Sbjct: 31  SVHIYNWYDYIAPNTVKDFQKEAGVSVVYDVFDNSEVMQSKL-MAGRSGYDVVVASADLL 89

Query: 84  EKMGREGLLAEIDHNQIPNMKDAMPTVLGL--AHDPQNKFSLPYIWGITGLYYNSSTLPN 141
             + + G+L  +D +++PN     P VL    ++DP N ++ PY+WG TG+ Y++  + +
Sbjct: 90  PNLIKAGVLKRLDRSKLPNWSHLDPDVLAKLQSNDPGNSYAAPYLWGTTGIGYDADKVKS 149

Query: 142 --GITKWADLWDKQYEQQ---------VMLIDDIRDVFGMALKLNGFSINTKNEEEIKKA 190
             G     + WD  ++++         V ++D   +V  +AL   G   N+ N ++ KKA
Sbjct: 150 LLGPDAPVNSWDLIFKEENLAKLRQCGVAMLDAPGEVIPIALHYLGLPYNSHNPDDYKKA 209

Query: 191 YESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEMP------ELKFVMPE 244
            E L+ L+ ++  ++S        +G   + + W G     Q           L + +P 
Sbjct: 210 QELLLKLRPHIAYFDSSRFISDLANGNVCVVLGWAGGVSDAQKASELAGNHRNLVYSIPR 269

Query: 245 EGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASATKGGRALLPAELR 304
           EGA +W+++    + + N      FIN+M +PE  AE    L Y +A K   AL+  ++R
Sbjct: 270 EGAPVWVESMVQLNDAPNPEQGLAFINYMLRPEVIAESSNYLSYPNANKDATALVEKKIR 329

Query: 305 DNPTIFPSDE 314
           DNP ++PS +
Sbjct: 330 DNPGVYPSKD 339