Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  133 bits (334), Expect = 8e-36
 Identities = 91/324 (28%), Positives = 160/324 (49%), Gaps = 19/324 (5%)

Query: 9   VLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKLL 68
           +LS V+A      E+ +N+Y+W  Y+  ++L+ FEQ+ G  + Y TF+  E + TKL L 
Sbjct: 10  LLSLVLALPLQAEEKVVNLYSWADYVAPQTLQRFEQETGYKVRYDTFDTPEVLETKL-LT 68

Query: 69  KGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLG-LAH-DPQNKFSLPYI 126
            G+GYDVV  S+  + +  +   L  +D   +P   +    +LG LA  DP N+ ++PY 
Sbjct: 69  GGSGYDVVVPSSTVLARALKAHALQPLDAQAMPGYGNLDKDLLGKLAEVDPGNRHAVPYT 128

Query: 127 WGITGLYYNSSTLPNGITKWA-DLWDKQYEQQ---------VMLIDDIRDVFGMALKLNG 176
           WG  GL  N   +   +     D  D  ++ +         + L D  ++V G+AL   G
Sbjct: 129 WGTLGLGVNVEAVRQRLGDVPLDSLDLLFKPEYATRLKGCGIALPDSPQEVIGVALNYLG 188

Query: 177 FSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEMP 236
               ++N++++  A   L  L+ ++    +        +G   L + +NG+A     +  
Sbjct: 189 KDPYSQNKDDLAAAQNLLSQLQPSISYVANGRQINDLANGSVCLALTYNGDAAMAADQAR 248

Query: 237 ------ELKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYAS 290
                 E+ + +P EG ++W DN  IP  + +   A  FI FM +PE+ A +  +L +A+
Sbjct: 249 RAGKPFEVIYRIPREGTLVWQDNLVIPKDAPHPEAARAFIAFMLKPESVAALTNTLFFAN 308

Query: 291 ATKGGRALLPAELRDNPTIFPSDE 314
           A +    L+   +R++P I+PS E
Sbjct: 309 ANQAATPLVDEAVRNDPDIYPSAE 332