Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  142 bits (358), Expect = 1e-38
 Identities = 90/338 (26%), Positives = 173/338 (51%), Gaps = 25/338 (7%)

Query: 1   MKTFIKG-LVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNE 59
           M+TF+   L+L+A VAS    A +T+ +Y W  Y+   +LK F+Q  G+   Y  +++NE
Sbjct: 1   MRTFLLAPLMLAASVAS----AAETVKIYNWSSYVAPDTLKNFQQASGIVPTYDVYDSNE 56

Query: 60  SMYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGL--AHDP 117
           ++  KL +   +GYDVVF S +F+ +  +   L  +D +++PN  +  P +L     +DP
Sbjct: 57  TLDGKL-MTGNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVNDP 115

Query: 118 QNKFSLPYIWGITGLYYNSSTLPN--GITKWADLWDKQYEQQVM---------LIDDIRD 166
            N++  PY+WG TG+ YN   +    G     D WD  ++ + M         ++D+  +
Sbjct: 116 GNQYGFPYLWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSCGVAVLDNGPE 175

Query: 167 VFGMALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNG 226
           +  +AL   G   ++++ ++ +KA + L+ ++  +  ++S        +G+  + + ++G
Sbjct: 176 LLPIALHYLGLPHHSQDPKDYEKAKDLLMKVRPYISYFHSSKYTGDLANGDICVVVGFSG 235

Query: 227 NAYQGQVEMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQA 280
           +  Q +    E        + +P+EGA +W D   +P  + +    + ++N++ QPE  A
Sbjct: 236 DVLQAKNRADEANNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKAGYAYMNYLLQPEVMA 295

Query: 281 EIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKK 318
            I   + YA+       L+   ++ N  I+PSDE M K
Sbjct: 296 NISNHVQYANGNLKADGLVDPAMKGNTMIYPSDEVMGK 333