Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., Putrescine-binding periplasmic protein SpuD from Pseudomonas lactucae CFBP13502

 Score =  149 bits (376), Expect = 1e-40
 Identities = 96/330 (29%), Positives = 169/330 (51%), Gaps = 22/330 (6%)

Query: 8   LVLSAVVASSQVYA-EQTLNVYAWGGYLPEKSLKAFEQQE-GVTINYSTFENNESMYTKL 65
           L L AV+ S   +A E+TL VY W  Y+  K+L+ F+ Q   + + Y  F+ NE++  KL
Sbjct: 7   LALCAVLLSGVAHADEKTLRVYNWFDYITPKALEDFKAQNPSLKLVYDIFDTNEALEAKL 66

Query: 66  KLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGL--AHDPQNKFSL 123
            L   +GYDVV  S  F+ K    G+   +D NQ+PN     P ++ L  A+DP N+F++
Sbjct: 67  -LTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRNQLPNWNHLDPKLMKLIEANDPGNQFAV 125

Query: 124 PYIWGITGLYYNSSTLPNGITKWA--DLWDKQYEQQ---------VMLIDDIRDVFGMAL 172
           PY++G   + +N + +   +   A  D WD  + ++         V L+D   ++  +AL
Sbjct: 126 PYMYGTILIGFNPAKVKAALGDNAPVDSWDLIFNEENISKLKQCGVALLDSPSEILPLAL 185

Query: 173 KLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQ 232
           +  G   N+ N ++ +KA   L+ ++  +  ++S        +G+  + + ++G+  Q  
Sbjct: 186 QHLGLDPNSNNPKDYEKAEALLLKIRPYITYFHSSKYMADIANGDICVAVGYSGSFSQAA 245

Query: 233 VEMPE------LKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSL 286
               E      +   +P+EGA +W D   IP G+KN   A+ FIN++ QP+  A I   +
Sbjct: 246 NRAREAHNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQVIAPISDFV 305

Query: 287 GYASATKGGRALLPAELRDNPTIFPSDEDM 316
           GY +  K     +   +R+NP ++P++  M
Sbjct: 306 GYPNPNKDATQQVDPAIRNNPNLYPTEAAM 335