Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  160 bits (404), Expect = 6e-44
 Identities = 103/364 (28%), Positives = 188/364 (51%), Gaps = 24/364 (6%)

Query: 2   KTFIKGLVLSA--VVASSQVYAEQ-TLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENN 58
           K ++ GLV  A  VV+   + AEQ TL++Y W  Y+   ++  FE++ G+ + Y  F++N
Sbjct: 7   KKWLSGLVAGALMVVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGINVIYDVFDSN 66

Query: 59  ESMYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HD 116
           E +  KL +   TG+D+V  SA F+E+    G+   +D +++P  K+  P +L L   HD
Sbjct: 67  EVLEGKL-MAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPGWKNLDPELLKLVAKHD 125

Query: 117 PQNKFSLPYIWGITGLYYNSSTLPNGITKWADL--WDKQYEQQ---------VMLIDDIR 165
           P NK+++PY+W  TG+ YN   +   +   A +  WD   + +         V  +D   
Sbjct: 126 PDNKYAMPYMWATTGIGYNVDKVKAVLGDDAPVNSWDLVLKPENLEKLKSCGVSFLDAPE 185

Query: 166 DVFGMALKLNGFSINT-KNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQW 224
           ++F   L   G   N+ K ++    A + L+ L+ N+  ++S        +G+  + + W
Sbjct: 186 EIFATVLNYLGKDPNSSKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDTCVAIGW 245

Query: 225 NGNAYQGQVEMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPEN 278
            G+ +Q      E K      F +P+EGA+ + D F +P+ +KN   A++F+N++ +P+ 
Sbjct: 246 AGDVWQAANRAKEAKNGVNISFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDV 305

Query: 279 QAEIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQ 338
            A I   + YA+A K   AL+  ++RDNP I+P  +   K   +    P+   +  + W 
Sbjct: 306 IAHISDHVFYANANKEATALVSQQVRDNPGIYPPADVRAKLFTLKVQEPKIDRVRTRAWT 365

Query: 339 RLRN 342
           ++++
Sbjct: 366 KVKS 369