Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  276 bits (706), Expect = 6e-79
 Identities = 134/333 (40%), Positives = 208/333 (62%), Gaps = 2/333 (0%)

Query: 10  LSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKLLK 69
           L+  ++++      TL  Y W  Y+P   L+ F ++ G+ + YST+E+NE+MY KLK  K
Sbjct: 14  LALGMSAAHASDNDTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYK 73

Query: 70  GTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAHDPQNKFSLPYIWGI 129
              YD+V  S Y+++KM +EG++ +ID +++ N  +  P +L    DP N +S+PYIWG 
Sbjct: 74  DGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFHNLDPEMLNKPFDPNNDYSVPYIWGA 133

Query: 130 TGLYYNSSTL-PNGITKWADLWDKQYEQQVMLIDDIRDVFGMALKLNGFSINTKNEEEIK 188
           T +  NS  + P  IT WADLW  +Y+  ++L DD R+VF MAL+  G+S NT + +EI+
Sbjct: 134 TAIGVNSDAIDPKTITSWADLWKPEYKNSLLLTDDAREVFQMALRKLGYSGNTTDPKEIE 193

Query: 189 KAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEMPELKFVMPEEGAV 248
            AYE L  L  NV  +NSD P  PY+ GE  LGM WNG+A+  +     L+ V P+EG +
Sbjct: 194 AAYEELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAFVARQAGTPLEVVWPKEGGI 253

Query: 249 LWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASATKGGRALLPAELRDNPT 308
            WMD+  IP+ +KN   A K INF+ +P+   E+ +++GY +     R LL  E+ ++ +
Sbjct: 254 FWMDSLAIPANAKNKEGALKLINFLLRPDVAKEVAETIGYPTPNLAARKLLSPEVANDKS 313

Query: 309 IFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341
           ++P  + + KGE+ NDVG +  AIYE+Y+Q+L+
Sbjct: 314 LYPDAQTISKGEWQNDVG-DASAIYEEYYQKLK 345