Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) from Escherichia coli BW25113

 Score =  271 bits (693), Expect = 2e-77
 Identities = 135/346 (39%), Positives = 212/346 (61%), Gaps = 6/346 (1%)

Query: 1   MKTFIKGLVLSAVVA--SSQVYAEQ--TLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFE 56
           MK + + L+ +  +A   S  +A+   TL  Y W  Y+P   L+ F ++ G+ + YST+E
Sbjct: 1   MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYE 60

Query: 57  NNESMYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAHD 116
           +NE+MY KLK  K   YD+V  S Y+++KM +EG++ +ID +++ N  +  P +L    D
Sbjct: 61  SNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFD 120

Query: 117 PQNKFSLPYIWGITGLYYNSSTL-PNGITKWADLWDKQYEQQVMLIDDIRDVFGMALKLN 175
           P N +S+PYIWG T +  N   + P  +T WADLW  +Y+  ++L DD R+VF MAL+  
Sbjct: 121 PNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKL 180

Query: 176 GFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEM 235
           G+S NT + +EI+ AY  L  L  NV  +NSD P  PY+ GE  LGM WNG+A+  +   
Sbjct: 181 GYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAG 240

Query: 236 PELKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASATKGG 295
             +  V P+EG + WMD+  IP+ +KN   A K INF+ +P+   ++ +++GY +     
Sbjct: 241 TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAA 300

Query: 296 RALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341
           R LL  E+ ++ T++P  E +K GE+ NDVG  + +IYE+Y+Q+L+
Sbjct: 301 RKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS-SIYEEYYQKLK 345