Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  166 bits (420), Expect = 9e-46
 Identities = 107/364 (29%), Positives = 190/364 (52%), Gaps = 24/364 (6%)

Query: 2   KTFIKGLVLSAVVASS--QVYAEQ-TLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENN 58
           K ++ GLV  A++A S   + AEQ TL++Y W  Y+   ++  FE++ G+ + Y  F++N
Sbjct: 6   KKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYDVFDSN 65

Query: 59  ESMYTKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLA--HD 116
           E +  KL +   TG+D+V  SA F+E+    G+   +D +++P  K+  P +L L   HD
Sbjct: 66  EVLEGKL-MAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHD 124

Query: 117 PQNKFSLPYIWGITGLYYNSSTLPNGITKWA--DLWDKQYEQQ---------VMLIDDIR 165
           P NKF++PY+W  TG+ YN   +   + + A  D WD   + +         V  +D   
Sbjct: 125 PDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPE 184

Query: 166 DVFGMALKLNGFSIN-TKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQW 224
           +VF   L   G   N TK ++    A + L+ L+ N+  ++S        +G+  + + W
Sbjct: 185 EVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGW 244

Query: 225 NGNAYQGQVEMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPEN 278
            G+ +Q      E K      F +P+EGA+ + D F +P+ +KN   A++F+N++ +P+ 
Sbjct: 245 AGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDV 304

Query: 279 QAEIVQSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQ 338
            A I   + YA+A K    L+ AE+R+NP I+P  +   K   +    P+   +  + W 
Sbjct: 305 VAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWT 364

Query: 339 RLRN 342
           ++++
Sbjct: 365 KVKS 368