Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., ABC transporter, substrate binding protein (putrescine) from Agrobacterium fabrum C58

 Score =  176 bits (446), Expect = 8e-49
 Identities = 96/352 (27%), Positives = 185/352 (52%), Gaps = 19/352 (5%)

Query: 8   LVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNESMYTKLKL 67
           L  + V A S +  E+ ++VY W  Y+    L+ F ++ G+ + Y  ++ NE + TKL L
Sbjct: 12  LTTALVAAGSAMAQEKVVHVYNWSDYIDPVILEDFTKETGIKVVYDVYDGNEVLETKL-L 70

Query: 68  LKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLG--LAHDPQNKFSLPY 125
              +GYDVV  ++ F+ +  + G+  ++D +++PN+K+A P +      +DP N++++ Y
Sbjct: 71  AGSSGYDVVAPTSPFLARQIKAGVYQKLDKSKLPNLKNAWPDITERLAKYDPGNEYAVNY 130

Query: 126 IWGITGLYYNSSTLPNGITKW-ADLWDKQYEQQ---------VMLIDDIRDVFGMALKLN 175
           +WG TG+ YN + +   +     D WD  ++ +         + ++D   + F +A+   
Sbjct: 131 MWGTTGIGYNVAKVKAALGDVPVDSWDVLFKPENAEKLKSCGINILDASDETFAIAMNYL 190

Query: 176 GFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQGQVEM 235
           G + ++K   +++   E    ++  V  +NS        +G+  + + W+G+  Q +   
Sbjct: 191 GKNPDSKETADLEAGGEVYSKIRPYVKTFNSSPYINDLANGDTCISIGWSGDILQAKTRA 250

Query: 236 PELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYA 289
            E K      +V+P+EG  +WMD+F IP+ +KN+  AH FIN+M +PE  A+    + YA
Sbjct: 251 EEAKNGVEVNYVIPKEGTYIWMDSFAIPADAKNVDEAHAFINYMMKPEVAAKASDYVQYA 310

Query: 290 SATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLR 341
           +     +AL+   +  NP ++P  E MKK   I+  GP+   +  + W +++
Sbjct: 311 NGNLPSQALMDPSVAKNPGVYPDPETMKKLFTISPYGPKEQRVLNRVWTQIK 362