Pairwise Alignments

Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  217 bits (552), Expect = 9e-61
 Identities = 164/500 (32%), Positives = 251/500 (50%), Gaps = 40/500 (8%)

Query: 25  NIVTALLSVQQLAISTAQET----LVESLSFELHAHQALTILGETGSGKSLLANAIIGNL 80
           N   A+L V+ L ++   +      +  L   + A + L I+GE+GSGKS+LA  ++G L
Sbjct: 5   NRSAAILEVRGLRVALPSDADRPHAIAQLDLRIEAGRTLCIVGESGSGKSVLATTVMGLL 64

Query: 81  PAGLRSQG-KIALFGQ--YQHQRTQAEREA--LWGKQLAVLPQEPWHALNPIMRAGEQVA 135
             GL  +G  + L G+    + R  +++    L G  + ++ QEP  ALNP++  GEQV 
Sbjct: 65  SKGLVLEGGDVILSGEKLVDNGRFTSDKRLRQLRGTGMGMVFQEPMTALNPVLTCGEQVD 124

Query: 136 EVHRLVMGNHAASA-ALTDSAFQQVALHQDL---SKYPHQLSGGMAQRVAYLCATQTQAP 191
           E+ R      AA   A   S F++V L       + YPHQLSGG  QR+    A   +  
Sbjct: 125 ELLRTHTAWGAAERKAHILSIFERVRLPDPARIHASYPHQLSGGQRQRIVIAMAIILKPR 184

Query: 192 LLIADEPTKGLDASRRDQIIALL-QAQLTRG-ALLTITHDIEVAEKLGGTIIVMRKGVIQ 249
           LLI DEPT  LD + + +I+ L+ + Q  +G A+L ITHD+ V  ++   ++VM +G + 
Sbjct: 185 LLICDEPTTALDVTTQAEILKLIAELQAEQGSAVLFITHDMGVVAEIADDVMVMHRGALV 244

Query: 250 EQGPAQQVLSHPQSDYTKALINADPRYWPTTPQSKTG-EPLLT---VDNIAMHRG----- 300
           EQGP  QVL  P+  YT+ L++A P   P   +   G  PLL    V  I   R      
Sbjct: 245 EQGPCDQVLRSPREAYTRMLLDAVPGMTPPPARELPGGRPLLAGQGVGKIYTRRDWLGRA 304

Query: 301 -EKCLFDSLSFTLSAGEILGISGDSGCGKSTLADLLLGLLKPSQGRI----HRLQAIPLG 355
                    S  +  GE +G+ G+SG GKST A  ++ L+ PS G I      ++ +P G
Sbjct: 305 KHNTALQDASVAVHRGETVGVVGESGSGKSTFARCMIRLISPSAGSILWGDAEVRDLPEG 364

Query: 356 KALKL-------YQDPPSALAKSVTLQTLLEDVCRQHSVE----RSQIPRLLERLALSPN 404
           +   L       +QDP  +L    T+ + + +      +     R     L++R+ L   
Sbjct: 365 RLRPLRSRVQVVFQDPNRSLNPRRTVGSSMVEGAMNFGLSKLHARQTAEELMDRIQLPRT 424

Query: 405 LLSRKANQVSGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQEIGC 464
            L R  +Q SGG+ QR AI RA+  +P +LVADE  S LD    A  L L+ E+ +++G 
Sbjct: 425 ALDRYPHQFSGGQRQRLAIARAIACQPQVLVADEAVSALDVSVQAQILDLLREIQRDLGL 484

Query: 465 ALVLISHDKLALEKTCHRVL 484
            ++ I+HD     + C RV+
Sbjct: 485 GILFITHDLRVAAQLCDRVI 504



 Score =  111 bits (277), Expect = 7e-29
 Identities = 84/238 (35%), Positives = 125/238 (52%), Gaps = 13/238 (5%)

Query: 44  TLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLRSQGKIALFGQYQHQRTQA 103
           T ++  S  +H  + + ++GE+GSGKS  A  +I  +     S G I L+G  + +    
Sbjct: 308 TALQDASVAVHRGETVGVVGESGSGKSTFARCMIRLISP---SAGSI-LWGDAEVRDLPE 363

Query: 104 EREALWGKQLAVLPQEPWHALNPIMRAGEQVAE--VHRLVMGNHAASAALTDSAFQQVAL 161
            R      ++ V+ Q+P  +LNP    G  + E  ++  +   HA   A  +    ++ L
Sbjct: 364 GRLRPLRSRVQVVFQDPNRSLNPRRTVGSSMVEGAMNFGLSKLHARQTA--EELMDRIQL 421

Query: 162 HQD-LSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQIIALL---QAQ 217
            +  L +YPHQ SGG  QR+A   A   Q  +L+ADE    LD S + QI+ LL   Q  
Sbjct: 422 PRTALDRYPHQFSGGQRQRLAIARAIACQPQVLVADEAVSALDVSVQAQILDLLREIQRD 481

Query: 218 LTRGALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQSDYTKALINADPR 275
           L  G +L ITHD+ VA +L   +IVM +G I EQGP  QV + P +DYT+ L+ A PR
Sbjct: 482 LGLG-ILFITHDLRVAAQLCDRVIVMSQGRIVEQGPTGQVFAAPANDYTRRLLAAAPR 538