Pairwise Alignments

Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  215 bits (548), Expect = 3e-60
 Identities = 158/498 (31%), Positives = 253/498 (50%), Gaps = 40/498 (8%)

Query: 23  RKNIVTALLSVQQLAISTAQ-ETLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLP 81
           +KN  ++LL V  L ++ A  + LV  +SF++   + + I+GE+GSGK+L A ++IG  P
Sbjct: 2   QKNDTSSLLQVSGLTLALADGKALVHGISFDIAPGEMIGIVGESGSGKTLAARSLIGLAP 61

Query: 82  AGL-RSQGKIALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAE---V 137
             + R+ G I   GQ     +      L G ++ ++ QEP  +LNP M  G Q+ E   +
Sbjct: 62  PAVHRTAGSIVFDGQEVTALSAGALRKLRGSRIGMVFQEPMTSLNPSMAIGRQLDEGLAL 121

Query: 138 HRLVMGNHAASAALTDSAFQQVALHQD---LSKYPHQLSGGMAQRVAYLCATQTQAPLLI 194
           H  +  + A   A      ++V +      LS YPH+ SGGM QR+    A   +  LLI
Sbjct: 122 HTTL--SPAQRRARILEMLERVRIQDPAAALSAYPHRFSGGMRQRIMLASAMLLRPSLLI 179

Query: 195 ADEPTKGLDASRRDQIIALLQAQLTRG---ALLTITHDIEVAEKLGGTIIVMRKGVIQEQ 251
           ADEPT  LDA  + +++ L+  +LTR    A+L I+HD+ +  +    ++VM  G I E 
Sbjct: 180 ADEPTTALDAVVQREVMDLM-VELTRDHGTAVLMISHDLPMVARYTDRMVVMHHGRIVES 238

Query: 252 GPAQQVLSHPQSDYTKALINADPRYWPTTPQSKTGEPLLTVDNIAMH----------RGE 301
                ++S P+ DYT+ L+ A P   P   +     P+L VD + +           R  
Sbjct: 239 NRTAALVSAPREDYTRKLLAAMPTRGPVR-EIPQAAPILEVDGLVLDFPAGGGLLSKRPP 297

Query: 302 KCLFDSLSFTLSAGEILGISGDSGCGKSTLADLLLGLLKPSQGRI--------HRLQAIP 353
           K     +   ++ GE++ + G SG GK+TL   + GLL+PS GRI         R +   
Sbjct: 298 KRALKGIDLRIAPGEVVALVGGSGSGKTTLGRAIAGLLQPSGGRILFEGKGIARRSEGWA 357

Query: 354 LGKAL--KLYQDPPSALAKSVTLQTLLEDVCR-----QHSVERSQIPRLLERLALSPNLL 406
             +A    ++QDP S+L   +T+   + +          +  R +I  +L+ ++L   + 
Sbjct: 358 RYRAQCQMVFQDPASSLDPRMTVGASIGEALTGMPGLTPAARRGRILEVLQEVSLPAEVA 417

Query: 407 SRKANQVSGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQEIGCAL 466
           SR  +++SGG+ QR AI RA++ RP  +VADEP S LD    A  L+L  +L    G + 
Sbjct: 418 SRYPHELSGGQRQRVAIARAVVRRPAFIVADEPVSALDVTVRAQILELFAQLQSRHGFSC 477

Query: 467 VLISHDKLALEKTCHRVL 484
           + ISHD   +E+   RV+
Sbjct: 478 LFISHDLAVVEQIADRVI 495



 Score =  118 bits (295), Expect = 6e-31
 Identities = 83/235 (35%), Positives = 126/235 (53%), Gaps = 11/235 (4%)

Query: 46  VESLSFELHAHQALTILGETGSGKSLLANAIIGNL-PAGLRSQGKIALFGQYQHQRTQAE 104
           ++ +   +   + + ++G +GSGK+ L  AI G L P+G    G+I   G+   +R+  E
Sbjct: 301 LKGIDLRIAPGEVVALVGGSGSGKTTLGRAIAGLLQPSG----GRILFEGKGIARRS--E 354

Query: 105 REALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMG-NHAASAALTDSAFQQVALHQ 163
             A +  Q  ++ Q+P  +L+P M  G  + E    + G   AA         Q+V+L  
Sbjct: 355 GWARYRAQCQMVFQDPASSLDPRMTVGASIGEALTGMPGLTPAARRGRILEVLQEVSLPA 414

Query: 164 DL-SKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQIIALL-QAQLTRG 221
           ++ S+YPH+LSGG  QRVA   A   +   ++ADEP   LD + R QI+ L  Q Q   G
Sbjct: 415 EVASRYPHELSGGQRQRVAIARAVVRRPAFIVADEPVSALDVTVRAQILELFAQLQSRHG 474

Query: 222 -ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQSDYTKALINADPR 275
            + L I+HD+ V E++   +IVMR G I EQGP  +V   P  DYT+ L+ A PR
Sbjct: 475 FSCLFISHDLAVVEQIADRVIVMRHGEIVEQGPRDEVFDRPHHDYTRELLAAAPR 529