Pairwise Alignments
Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056
Subject, 623 a.a., Dipeptide transport ATP-binding protein DppD in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Score = 209 bits (532), Expect = 2e-58
Identities = 166/529 (31%), Positives = 253/529 (47%), Gaps = 81/529 (15%)
Query: 30 LLSVQQLAISTAQE----TLVESLSFELHAHQALTILGETGSGKSLLANAII-------- 77
+LSV L I+ E V ++S L + L I+GE+GSGKS+ A A++
Sbjct: 12 VLSVSGLNIAFHHEGQQVDAVRNVSLRLKRGETLAIVGESGSGKSVTALALMRLIEQSGA 71
Query: 78 ----GNLPAGLRSQGKIALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQ 133
G + R++ I L +++ A+ + G +A++ QEP +LNP+ GEQ
Sbjct: 72 NVRCGEMLLRRRNRQVIEL-----SEQSDAQMRRVRGADIAMIFQEPMTSLNPVFTVGEQ 126
Query: 134 VAEVHRLVMG-NHAASAALTDSAFQQVALHQD---LSKYPHQLSGGMAQRVAYLCATQTQ 189
+AE RL G +H + A QV + + LS+YPHQLSGGM QRV A +
Sbjct: 127 IAESIRLHQGASHEEALAEAKRMLDQVRIPESQAILSRYPHQLSGGMRQRVMIAMALSCR 186
Query: 190 APLLIADEPTKGLDASRRDQIIAL---LQAQLTRGALLTITHDIEVAEKLGGTIIVMRKG 246
+LIADEPT LD + + QI+ L LQ +++ G + ITHD+ V + ++VM +G
Sbjct: 187 PAVLIADEPTTALDVTIQAQILQLIKVLQQEMSMGVIF-ITHDMGVVADIADRVLVMYQG 245
Query: 247 VIQEQGPAQQVLSHPQSDYTKALINADPRYWPTTPQSKTGE-PLLTVDNIAMHR------ 299
E G +Q+ P YT+ L+ A P+ S PL++ D A++
Sbjct: 246 EAVETGSVEQIFHAPTHPYTQTLLAAVPQLGAMRGHSLPRRFPLISADEPALYESQIEQD 305
Query: 300 ----GEKCL-------------------------FDSLSFTLSAGEILGISGDSGCGKST 330
GE L +++SF L GE L + G+SG GKST
Sbjct: 306 TVVEGEPILQVRGLVTRFPLRSGLFNRVTREVHAVENISFDLWPGETLSLVGESGSGKST 365
Query: 331 LADLLLGLLKPSQGRI----HRLQAIPLGKALKL-------YQDPPSALAKSVTLQTLLE 379
LL L++ QG I R+ + GK L +QDP ++L T+ +
Sbjct: 366 TGRALLRLVESRQGEIIFNGQRIDTLSAGKLQPLRRDIQCIFQDPYASLDPRQTVGYSIM 425
Query: 380 DVCRQHSVERS-----QIPRLLERLALSPNLLSRKANQVSGGELQRFAILRALLTRPTLL 434
+ R H + + ++ LLER+ L P R ++ SGG+ QR I RAL P ++
Sbjct: 426 EPLRIHGLGQGDAAAKRVAWLLERVGLRPEHAWRYPHEFSGGQRQRICIARALALNPKVI 485
Query: 435 VADEPTSRLDPITAASTLQLIIELTQEIGCALVLISHDKLALEKTCHRV 483
+ADE S LD + L+++L +E+G A + ISHD +E+ HRV
Sbjct: 486 IADEAVSALDVSVRGQIINLLLDLQREMGIAYLFISHDMAVVERISHRV 534
Score = 110 bits (274), Expect = 2e-28
Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 8/239 (3%)
Query: 40 TAQETLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLRSQGKIALFGQYQHQ 99
T + VE++SF+L + L+++GE+GSGKS A++ + + QG+I GQ
Sbjct: 334 TREVHAVENISFDLWPGETLSLVGESGSGKSTTGRALLRLVES---RQGEIIFNGQRIDT 390
Query: 100 RTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLV-MGNHAASAALTDSAFQQ 158
+ + + L + + + Q+P+ +L+P G + E R+ +G A+A ++
Sbjct: 391 LSAGKLQPL-RRDIQCIFQDPYASLDPRQTVGYSIMEPLRIHGLGQGDAAAKRVAWLLER 449
Query: 159 VALHQDLS-KYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQII-ALLQA 216
V L + + +YPH+ SGG QR+ A ++IADE LD S R QII LL
Sbjct: 450 VGLRPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSVRGQIINLLLDL 509
Query: 217 QLTRG-ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQSDYTKALINADP 274
Q G A L I+HD+ V E++ + VM G I E GP + V +PQ YT+ L+ A P
Sbjct: 510 QREMGIAYLFISHDMAVVERISHRVAVMYLGQIVEMGPRRAVFENPQHPYTRKLMAAVP 568
Score = 83.2 bits (204), Expect = 2e-20
Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 31/222 (13%)
Query: 294 NIAMHR-GEKC-LFDSLSFTLSAGEILGISGDSGCGKSTLADLLLGLLKPSQGRIH---- 347
NIA H G++ ++S L GE L I G+SG GKS A L+ L++ S +
Sbjct: 19 NIAFHHEGQQVDAVRNVSLRLKRGETLAIVGESGSGKSVTALALMRLIEQSGANVRCGEM 78
Query: 348 -----RLQAIPLGKA-------------LKLYQDPPSALAKSVTLQTLLEDVCR-----Q 384
Q I L + ++Q+P ++L T+ + + R
Sbjct: 79 LLRRRNRQVIELSEQSDAQMRRVRGADIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS 138
Query: 385 HSVERSQIPRLLERLAL--SPNLLSRKANQVSGGELQRFAILRALLTRPTLLVADEPTSR 442
H ++ R+L+++ + S +LSR +Q+SGG QR I AL RP +L+ADEPT+
Sbjct: 139 HEEALAEAKRMLDQVRIPESQAILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTA 198
Query: 443 LDPITAASTLQLIIELTQEIGCALVLISHDKLALEKTCHRVL 484
LD A LQLI L QE+ ++ I+HD + RVL
Sbjct: 199 LDVTIQAQILQLIKVLQQEMSMGVIFITHDMGVVADIADRVL 240