Pairwise Alignments

Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

 Score =  245 bits (625), Expect = 3e-69
 Identities = 169/471 (35%), Positives = 254/471 (53%), Gaps = 28/471 (5%)

Query: 30  LLSVQQLAIS--TAQETL--VESLSFELHAHQALTILGETGSGKSLLANAIIG--NLPAG 83
           LL V+ L++   TA  T+  V ++S+ +   + L ILGE+GSGKS+ ++AI+   ++P G
Sbjct: 5   LLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMPPG 64

Query: 84  LRSQGKIALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMG 143
             S G+I L G+   + +  +R A+ G+ +A++ Q+P   LNP+   G Q+ E  R    
Sbjct: 65  KISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREALRTHGI 124

Query: 144 NHAASAALTDSAFQQVALHQD---LSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTK 200
           ++  +       F++VAL +    + KYPH+ SGG  QRV    A   +  LLIADEPT 
Sbjct: 125 DNRQAQVEALRLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNLLIADEPTT 184

Query: 201 GLDASRRDQIIALLQA--QLTRGALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVL 258
            LD + + +++ALL+   + T   +L ITHD+ V  ++   ++VM KGV+ E G  ++V 
Sbjct: 185 ALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVESGTVREVY 244

Query: 259 SHPQSDYTKALINADPRYWPTTPQSKTGEPLLTVDNIAMHRGEKCLFDSLSFTLSAGEIL 318
            +PQ  YTK LI A P        S  GEP+L V N     G       +SF L AGE +
Sbjct: 245 RNPQHPYTKKLIAAAPGKGQLHEPSTDGEPILKVRNARKSYGGFEALKGISFDLKAGETV 304

Query: 319 GISGDSGCGKSTLADLLLGLLKPSQGRIH----RLQAIPLGKALKL-------YQDPPSA 367
            + G+SG GKSTLA +LL L  P  G  H     L  +   +  KL       +QDP  +
Sbjct: 305 AVVGESGSGKSTLARILLRLDDPDSGTAHWKGQDLFTLSPSELFKLRRDLQMVFQDPTQS 364

Query: 368 LAKSVTLQTLLEDVCRQH------SVERSQIPRLLERLALSPNLLSRKANQVSGGELQRF 421
           L   +T+  L+ +    H      +  R++   LLER+ LSP  + R  +Q SGG+ QR 
Sbjct: 365 LNPRMTVYQLISEAWVIHPEILPKAKWRARAAELLERVGLSPEHMGRYPHQFSGGQRQRI 424

Query: 422 AILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQEIGCALVLISHD 472
           AI RAL   P L+V DE  S LD    A  ++L+ +L +E+G A + I+HD
Sbjct: 425 AIARALALEPQLIVCDEAVSALDVSVQAQVVRLLDKLRREMGIAFIFIAHD 475



 Score =  100 bits (250), Expect = 1e-25
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 13/250 (5%)

Query: 30  LLSVQQLAISTAQETLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLRSQGK 89
           +L V+    S      ++ +SF+L A + + ++GE+GSGKS LA  +   L       G 
Sbjct: 275 ILKVRNARKSYGGFEALKGISFDLKAGETVAVVGESGSGKSTLARIL---LRLDDPDSGT 331

Query: 90  IALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAE---VHRLVMGNHA 146
               GQ     + +E   L  + L ++ Q+P  +LNP M   + ++E   +H  ++   A
Sbjct: 332 AHWKGQDLFTLSPSELFKL-RRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPEILPK-A 389

Query: 147 ASAALTDSAFQQVALHQD-LSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDAS 205
              A      ++V L  + + +YPHQ SGG  QR+A   A   +  L++ DE    LD S
Sbjct: 390 KWRARAAELLERVGLSPEHMGRYPHQFSGGQRQRIAIARALALEPQLIVCDEAVSALDVS 449

Query: 206 RRDQIIALLQAQLTRG---ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQ 262
            + Q++ LL  +L R    A + I HD+ +       ++VM+KG + E G   QV  +PQ
Sbjct: 450 VQAQVVRLLD-KLRREMGIAFIFIAHDLPLVRDFADYVMVMQKGEVVEFGTVAQVFDNPQ 508

Query: 263 SDYTKALINA 272
             YT+ALI+A
Sbjct: 509 QRYTQALISA 518



 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 23/201 (11%)

Query: 307 SLSFTLSAGEILGISGDSGCGKSTLADLLLGLLKPSQGRIHRLQAIPLGKAL-------- 358
           ++S+ +  GE L I G+SG GKS  +  ++ L+    G+I   + +  GK L        
Sbjct: 27  NISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMPPGKISSGEILLNGKDLLKMSADDR 86

Query: 359 ---------KLYQDPPSALAKSVTLQTLLEDVCRQHSVERSQIP----RLLERLALSP-- 403
                     ++QDP S L    T+   + +  R H ++  Q      RL +R+AL    
Sbjct: 87  RAVNGRLIAMIFQDPLSHLNPVYTVGWQMREALRTHGIDNRQAQVEALRLFKRVALPEPE 146

Query: 404 NLLSRKANQVSGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQEIG 463
             + +  ++ SGG+ QR  I  AL  +P LL+ADEPT+ LD    A  L L+ EL +E G
Sbjct: 147 KAVDKYPHEFSGGQRQRVMIAMALALKPNLLIADEPTTALDVTVQAEVLALLKELQRETG 206

Query: 464 CALVLISHDKLALEKTCHRVL 484
             +++I+HD   + +   RV+
Sbjct: 207 MGVLIITHDLGVVSEVADRVV 227