Pairwise Alignments

Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  223 bits (569), Expect = 1e-62
 Identities = 161/499 (32%), Positives = 256/499 (51%), Gaps = 46/499 (9%)

Query: 29  ALLSVQQLAISTAQE----TLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLP--A 82
           A++  + +A++   E      V+ +SF+L+  + + I+GE+GSGKS+ A  I+G L   A
Sbjct: 24  AIIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRA 83

Query: 83  GLRSQGKIALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAE---VHR 139
            +     +   G    + +  +R AL G +++++ QEP  +LNPI   G Q+ E   VH 
Sbjct: 84  SVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVHS 143

Query: 140 LVMGNHAASAALTDSAFQQVALHQD---LSKYPHQLSGGMAQRVAYLCATQTQAPLLIAD 196
            +    A + AL     +QV + +    L +YPHQLSGG  QRV    A      +LIAD
Sbjct: 144 RLSRKEAEARAL--DLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIAD 201

Query: 197 EPTKGLDASRRDQIIALLQ-AQLTRG-ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPA 254
           EPT  LD + + QI+ L++  Q  RG A++ ITHD+ + ++    + VM+ G ++E    
Sbjct: 202 EPTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTT 261

Query: 255 QQVLSHPQSDYTKALINADPRYWPTTPQSKTGEPLLTVDNIA----MHRG--------EK 302
           +++ + PQ  YTK L+ ++PR     P  +    LLT   +     M  G        E 
Sbjct: 262 ERLFAAPQHPYTKRLLASEPR-GTAKPLPENSGVLLTASGVRVSFMMRYGGLFKPELKEL 320

Query: 303 CLFDSLSFTLSAGEILGISGDSGCGKSTLADLLLGLLKPSQGRI----------HRLQAI 352
              DSL  TL   E LG+ G+SG GK+T    LL L +P  G +           R +  
Sbjct: 321 IAVDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRLNEPVGGEVIFDGERVDGRSRSEMR 380

Query: 353 PLGKALKL-YQDPPSALAKSVTLQTLLEDVCRQHSVERSQIPRL------LERLALSPNL 405
           PL   +++ +QDP ++L   +T+  ++E+    + + R++  RL      LE   +  N+
Sbjct: 381 PLRSRMQIVFQDPFASLNPRMTIGQIIEEGLIINGLGRTKAERLERVRDALEAAGMPGNI 440

Query: 406 LSRKANQVSGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQEIGCA 465
           LSR  ++ SGG+ QR AI RA+   P  ++ DEPTS LD    A  + L+ +L  E G +
Sbjct: 441 LSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRKLQDERGLS 500

Query: 466 LVLISHDKLALEKTCHRVL 484
            + ISHD   +   CHRV+
Sbjct: 501 YLFISHDLKVVRALCHRVI 519



 Score =  116 bits (290), Expect = 2e-30
 Identities = 80/234 (34%), Positives = 130/234 (55%), Gaps = 13/234 (5%)

Query: 46  VESLSFELHAHQALTILGETGSGKSLLANAIIG-NLPAGLRSQGKIALFGQYQHQRTQAE 104
           V+SL   L  H+ L ++GE+GSGK+    +++  N P G    G++   G+    R+++E
Sbjct: 323 VDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRLNEPVG----GEVIFDGERVDGRSRSE 378

Query: 105 REALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMGNHAASAALTD---SAFQQVAL 161
              L  +   V  Q+P+ +LNP M  G Q+ E   ++ G     A   +    A +   +
Sbjct: 379 MRPLRSRMQIVF-QDPFASLNPRMTIG-QIIEEGLIINGLGRTKAERLERVRDALEAAGM 436

Query: 162 HQD-LSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQIIALLQA-QLT 219
             + LS++PH+ SGG  QR+A   A   +   ++ DEPT  LD S + QII LL+  Q  
Sbjct: 437 PGNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRKLQDE 496

Query: 220 RG-ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQSDYTKALINA 272
           RG + L I+HD++V   L   +IVM+ G I E+GP + VL++P+++YT+ L+ A
Sbjct: 497 RGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQRLVRA 550