Pairwise Alignments

Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  216 bits (551), Expect = 1e-60
 Identities = 164/527 (31%), Positives = 261/527 (49%), Gaps = 74/527 (14%)

Query: 29  ALLSVQQLAISTAQETLVESLSFELHAHQALTILGETGSGKSL--LANAIIGNLPAGLRS 86
           ALLSV+ L++      +V+ +SF +   + + ++GE+GSGKS+  L+   + ++      
Sbjct: 8   ALLSVEGLSVEFGDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGATYP 67

Query: 87  QGKIALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMGNHA 146
            GKI   G+   + +Q E  ++ GK++A++ QEP  +LNP+   G+Q+ EV  LV+    
Sbjct: 68  TGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEV--LVLHEKL 125

Query: 147 ASAALTDSAFQQVAL------HQDLSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTK 200
              A  + A Q + +       + L +YPHQLSGGM QRV    A   +  LLIADEPT 
Sbjct: 126 GKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPTT 185

Query: 201 GLDASRRDQIIAL---LQAQLTRGALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQV 257
            LD + + QI+ +   LQ +L  G ++ ITHD+ V  ++   ++VM KG   E+GP + +
Sbjct: 186 ALDVTIQAQILNIMRDLQKKLGMG-MVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDI 244

Query: 258 LSHPQSDYTKALINADPRYWPTTPQS----------KTGE------------------PL 289
            ++PQ  YT+AL++A PR      ++          + G+                  PL
Sbjct: 245 FANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQKPL 304

Query: 290 LTVDNI-------------AMHRGEKCLFDSLSFTLSAGEILGISGDSGCGKSTLADLLL 336
           L+V ++             A HR        +SF + AGE L + G+SG GKST+   + 
Sbjct: 305 LSVKDLFVRFDIRKNLFGKATHR--LSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQ 362

Query: 337 GLLKPSQGRI-------HRLQAIPLGKALK----LYQDPPSALAKSVTLQTLLEDVCRQH 385
            L     G I        ++ A    +  +    ++QDP ++L    T+   + +    H
Sbjct: 363 QLQTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTH 422

Query: 386 SV------ERSQIPRLLERLALSPNLLSRKANQVSGGELQRFAILRALLTRPTLLVADEP 439
            +       R ++  LLER+ LS    +R  ++ SGG+ QR  I RAL + P L++ADE 
Sbjct: 423 GLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEA 482

Query: 440 TSRLDPITAASTLQLIIELTQEIGCALVLISHDKLALEKTCHRVLSL 486
            S LD    A  + L ++L  E G A + ISHD   +EK  HRV  L
Sbjct: 483 LSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVL 529



 Score =  121 bits (304), Expect = 6e-32
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 39  STAQETLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLRSQGKIALFGQYQH 98
           +T + + V+ +SF++HA + L ++GE+GSGKS +   I     A     G+IA  G+   
Sbjct: 324 ATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQLQTA---VSGEIAFNGRSYS 380

Query: 99  QRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAE---VHRLVMGNHAASAALTDSA 155
           Q + AER  +  +++  + Q+P+ +L+P    G  +AE    H L+    A    + D  
Sbjct: 381 QMSAAERFRM-RQEVQYIFQDPFASLDPRKTVGFSIAEPINTHGLINDQKAVRRRV-DEL 438

Query: 156 FQQVALHQD-LSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDASRRDQIIAL- 213
            ++V L  +  ++YPH+ SGG  QRV    A  +   L+IADE    LD S + QII L 
Sbjct: 439 LERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEALSALDVSIQAQIINLF 498

Query: 214 LQAQLTRG-ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQSDYTKALINA 272
           +  Q  RG A L I+HD+ V EK+   + V+  G I E G  QQV   P  DYT+ L++A
Sbjct: 499 MDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQVFETPTHDYTRRLLSA 558

Query: 273 DPRYWPT 279
            P   PT
Sbjct: 559 VPVADPT 565