Pairwise Alignments

Query, 486 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  213 bits (541), Expect = 2e-59
 Identities = 156/493 (31%), Positives = 249/493 (50%), Gaps = 42/493 (8%)

Query: 33  VQQLAISTAQETLVESLSFELHAHQALTILGETGSGKSLLANAIIGNLPA-GLRSQGKIA 91
           V +  + T     V  +SF +   + L ++GE+GSGKS+ A +I+  + + G  + G I 
Sbjct: 14  VTEFPLRTGVFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDSPGYITSGSII 73

Query: 92  LFGQYQHQRTQAERE-------ALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMGN 144
           L          A+ +       A+ G  +A++ QEP  +L+P+   G+Q+ EV RL +  
Sbjct: 74  LNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITEVLRLHLKM 133

Query: 145 HAASA-ALTDSAFQQVAL---HQDLSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTK 200
             A A A      +QV +    + L +Y  Q SGGM QR     A   +  LLIADEPT 
Sbjct: 134 SKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQLLIADEPTT 193

Query: 201 GLDASRRDQIIALL-QAQLTRG-ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVL 258
            LD + + +I+ L+ + Q   G A+L ITHD+ V  ++   ++VM  GV++E G  +Q+ 
Sbjct: 194 ALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKEYGTVEQIF 253

Query: 259 SHPQSDYTKALINADPRYWPTT-------PQSKTGEPLLTVDNIAMHRGEKCLFDSLSFT 311
             PQ  YT+ LI +  +            P  +T  P+L V +++MH GE    D +S  
Sbjct: 254 HKPQDPYTRMLIGSVLKLEQKAEIRLARPPLDQTAAPILEVKDLSMHFGEMKALDGVSIK 313

Query: 312 LSAGEILGISGDSGCGKSTLADLLLGLLKPSQGRIHRLQA----IPL----GKALK---- 359
           L  GE LGI G+SG GK+T+   ++ L  P+ G +   +A    + L    GK LK    
Sbjct: 314 LLPGETLGIVGESGSGKTTMGRSIMRLYDPTAGEMLYRRADGSVVDLSKIEGKELKAARR 373

Query: 360 ----LYQDPPSALAKSVTLQTLLEDVCRQHSVERSQ-----IPRLLERLALSPNLLSRKA 410
               ++QDP  +L   +T+  ++ +    + + + +     +  L+E++ L P+   R  
Sbjct: 374 ELRMVFQDPFGSLNPRMTVAQVIGEPLLVNGIAKGKELEERVCSLMEQVGLDPSGRERYP 433

Query: 411 NQVSGGELQRFAILRALLTRPTLLVADEPTSRLDPITAASTLQLIIELTQEIGCALVLIS 470
           +  SGG+ QR  I RA+  RP ++VADE TS LD       L L+++L  E+G A + IS
Sbjct: 434 HAFSGGQRQRIGIARAITLRPRIIVADEATSALDVSVRFQVLDLLMKLQDELGLAYIFIS 493

Query: 471 HDKLALEKTCHRV 483
           HD   +   C RV
Sbjct: 494 HDIGVIRYMCDRV 506



 Score =  100 bits (248), Expect = 2e-25
 Identities = 78/258 (30%), Positives = 135/258 (52%), Gaps = 19/258 (7%)

Query: 30  LLSVQQLAISTAQETLVESLSFELHAHQALTILGETGSGKSLLANAIIG--NLPAG---- 83
           +L V+ L++   +   ++ +S +L   + L I+GE+GSGK+ +  +I+   +  AG    
Sbjct: 291 ILEVKDLSMHFGEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTAGEMLY 350

Query: 84  LRSQGKIALFGQYQHQRTQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMG 143
            R+ G +    + + +  +A R     ++L ++ Q+P+ +LNP M   + + E   L++ 
Sbjct: 351 RRADGSVVDLSKIEGKELKAAR-----RELRMVFQDPFGSLNPRMTVAQVIGEP--LLVN 403

Query: 144 NHAASAALTD---SAFQQVALHQD-LSKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPT 199
             A    L +   S  +QV L      +YPH  SGG  QR+    A   +  +++ADE T
Sbjct: 404 GIAKGKELEERVCSLMEQVGLDPSGRERYPHAFSGGQRQRIGIARAITLRPRIIVADEAT 463

Query: 200 KGLDASRRDQIIALL-QAQLTRG-ALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQV 257
             LD S R Q++ LL + Q   G A + I+HDI V   +   + VM +G + E G A++V
Sbjct: 464 SALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAEKV 523

Query: 258 LSHPQSDYTKALINADPR 275
            + P   YT+AL++A PR
Sbjct: 524 CNAPDHPYTQALLSAIPR 541