Pairwise Alignments

Query, 270 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  105 bits (263), Expect = 9e-28
 Identities = 62/246 (25%), Positives = 118/246 (47%)

Query: 22  LLILLVMLVLIEHLLYGGDPAKQDLNRALAAPSWGEPLGTDHYGRSNFARLSSAIATSLT 81
           +++L++++++    L   DP   DL   L  PS     GTD  GR  F+R+      S+ 
Sbjct: 39  IIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSIL 98

Query: 82  MAVACVSSSALLGLVTGVVAAWKRGWWDRGFSWLLNMLLAMPGLILVLLFGAMVPGSFFI 141
             +  V+ + ++G + G ++    G  D     +++++L++P L+L +   A +  S F 
Sbjct: 99  AGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFN 158

Query: 142 LYLAIALMLWVEFFRVVRSKTLSLLEQPQIEASRLYGFNAWYLFRRHLWPELREDLFTLA 201
             LAIA++    + R+ R + L + +   ++A++ +G + W+L   H+       L   A
Sbjct: 159 AMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQA 218

Query: 202 CFGAGNAILALASIGFLYVGLKPPQAELGMMMVELFRYYHQALWVLAQPILVVFILVLSF 261
               G+AIL  A++GF+ +G + P AE G M+     Y     W  A P   + +  + F
Sbjct: 219 SLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGF 278

Query: 262 QMLAKG 267
            +   G
Sbjct: 279 NLFGDG 284