Pairwise Alignments

Query, 270 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  110 bits (275), Expect = 4e-29
 Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 1/246 (0%)

Query: 23  LILLVMLVLIEHLLYGGDPAKQ-DLNRALAAPSWGEPLGTDHYGRSNFARLSSAIATSLT 81
           +ILL+++ +    +   D     D +     PS     G D  GR  F+R+      SL 
Sbjct: 47  VILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLA 106

Query: 82  MAVACVSSSALLGLVTGVVAAWKRGWWDRGFSWLLNMLLAMPGLILVLLFGAMVPGSFFI 141
             V  V   A +G + G++A +  GWWDR    + ++L A PG++L +   A++      
Sbjct: 107 AGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIAN 166

Query: 142 LYLAIALMLWVEFFRVVRSKTLSLLEQPQIEASRLYGFNAWYLFRRHLWPELREDLFTLA 201
           + +A+A+     F R+VR  TL L +Q  IE++R  G +   +  RH+ P     +    
Sbjct: 167 VIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTVLLRHILPGTVSSIVVFF 226

Query: 202 CFGAGNAILALASIGFLYVGLKPPQAELGMMMVELFRYYHQALWVLAQPILVVFILVLSF 261
               G +I++ AS+ FL +G +PP  E G M+ E       A  V   P L +F+ VL+F
Sbjct: 227 TMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPALAIFLTVLAF 286

Query: 262 QMLAKG 267
            +L  G
Sbjct: 287 NLLGDG 292