Pairwise Alignments

Query, 270 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  105 bits (263), Expect = 8e-28
 Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 1/261 (0%)

Query: 8   MKLHLSKPQW-LGVSLLILLVMLVLIEHLLYGGDPAKQDLNRALAAPSWGEPLGTDHYGR 66
           M+L   +P + +G+++   LV + L+  +     P K  + + L +P     LGTDH+GR
Sbjct: 1   MRLLRRRPAFVIGIAVTSFLVAVALLSLVWTPLSPTKIQIVQKLKSPLVYGGLGTDHFGR 60

Query: 67  SNFARLSSAIATSLTMAVACVSSSALLGLVTGVVAAWKRGWWDRGFSWLLNMLLAMPGLI 126
              + L +    SL+ A+A V+  AL+G   GV  A  RG+ +     + +++ A+P ++
Sbjct: 61  DVLSMLMAGAWNSLSTAIAAVAIGALIGTAIGVTVAALRGFTETVVMRICDIIFAVPPIL 120

Query: 127 LVLLFGAMVPGSFFILYLAIALMLWVEFFRVVRSKTLSLLEQPQIEASRLYGFNAWYLFR 186
             ++ GA +    F   +AIA  +   F R+     L +  +  I A+   G N   +  
Sbjct: 121 SAMMLGAFIGTGRFTAIIAIATFMVPVFARLTLGAALQIWAREYITAATSIGQNRAKITL 180

Query: 187 RHLWPELREDLFTLACFGAGNAILALASIGFLYVGLKPPQAELGMMMVELFRYYHQALWV 246
            H+ P +   +        G AIL  A + FL +G+ PP A  G M+ +   Y   A W+
Sbjct: 181 FHIVPNISNQIIVQVTIQLGLAILTEAGLSFLGLGMPPPAATWGRMLADAQTYLGAAPWL 240

Query: 247 LAQPILVVFILVLSFQMLAKG 267
              P L + + V    +L  G
Sbjct: 241 AIMPGLAIALAVFGLNLLGDG 261