Pairwise Alignments

Query, 270 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  113 bits (282), Expect = 6e-30
 Identities = 73/252 (28%), Positives = 118/252 (46%), Gaps = 2/252 (0%)

Query: 18  LGVSLLILLVMLVLIEHLLYGGDPAKQDLNRALAAP--SWGEPLGTDHYGRSNFARLSSA 75
           LG+ ++I L+ + L   +L   +P + DL  A   P  + G  LGTD  GR   +RL   
Sbjct: 47  LGLVIIIALLFVALFADVLAPHNPVQGDLRNARLLPPGTAGYLLGTDDQGRDILSRLIHG 106

Query: 76  IATSLTMAVACVSSSALLGLVTGVVAAWKRGWWDRGFSWLLNMLLAMPGLILVLLFGAMV 135
              +L + +     +A +GL+ G V+ +  GW D     + ++ LA P L+L L   A +
Sbjct: 107 SRLTLFVVLLVAIIAAPIGLIVGTVSGYAGGWVDAILMRITDIFLAFPKLVLALALVAAL 166

Query: 136 PGSFFILYLAIALMLWVEFFRVVRSKTLSLLEQPQIEASRLYGFNAWYLFRRHLWPELRE 195
                   LAIA+  W  + R+ R++T++      I A +L G + + +  +H+ P    
Sbjct: 167 GPGIENAVLAIAVTSWPPYARIARAETMTFRNSDFIAAVKLMGASPFRIVLKHVMPLCLS 226

Query: 196 DLFTLACFGAGNAILALASIGFLYVGLKPPQAELGMMMVELFRYYHQALWVLAQPILVVF 255
            L           IL  A +GFL +G +PP  E G M+    R+     WV A P + + 
Sbjct: 227 SLIVRVTLDMAGIILTAAGLGFLGLGAQPPLPEWGAMIASGRRFILDQWWVAAMPGIAIL 286

Query: 256 ILVLSFQMLAKG 267
           I+ L F +L  G
Sbjct: 287 IVSLGFNLLGDG 298