Pairwise Alignments

Query, 270 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  106 bits (264), Expect = 7e-28
 Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 3/252 (1%)

Query: 18  LGVSLLILLVMLVLIEHLLYGGDPAKQDLNRALAAPSWGEPL-GTDHYGRSNFARLSSAI 76
           LGV ++++++   ++   L   D    DL    A P  G  + GTD  GR   ARL +A 
Sbjct: 34  LGVIMIMIMIFACVVGPYLLPYDELFIDLRARFAPPLTGYHIFGTDPLGRDIAARLFNAG 93

Query: 77  ATSLTMAVACVSSSALLGLVTGVVAAWKRGWWDRGFSWLLNMLLAMPGLILVLLFGAMVP 136
             SL +    +  S L+G V GVVA +  G         ++  L+ P + L+L   A V 
Sbjct: 94  RISLLVGFFAMVLSTLIGTVIGVVAGYYGGRIGAILMRFVDAFLSFPSIFLLLALAAFVK 153

Query: 137 GSFFILYLAIALMLWVEFFRVVRSKTLSLLEQPQIEASRLYGF-NAWYLFRRHLWPELRE 195
            S F++ L IA+  W+E  R+V ++  SL E+  + A+R+ G  N W +FR  L P    
Sbjct: 154 PSPFMITLIIAVTSWMEIARLVEAEVRSLRERDFVMAARMLGLPNGWIMFRE-LLPNAIG 212

Query: 196 DLFTLACFGAGNAILALASIGFLYVGLKPPQAELGMMMVELFRYYHQALWVLAQPILVVF 255
            +   A      AIL  A I FL  G++PP    G M+    +Y  +A W+   P + + 
Sbjct: 213 PIIVAATLTVARAILLEAYISFLGYGIQPPLPSWGNMLNGAQQYLDKAPWLAIIPGVAIT 272

Query: 256 ILVLSFQMLAKG 267
           + V SF  +  G
Sbjct: 273 LAVTSFNFIGDG 284