Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  163 bits (413), Expect = 5e-45
 Identities = 106/323 (32%), Positives = 164/323 (50%), Gaps = 17/323 (5%)

Query: 2   TKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELG 61
           ++ LV   +QA+     V  L FILM+ IPGD A  +AA         A++   +R   G
Sbjct: 7   SRTLVRTAWQAVPTVIGVILLNFILMQLIPGDAADVVAAESGS---ATAESMAQLRTHFG 63

Query: 62  LDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPI 121
           LD    +    +L +L H +LG S   + PV+  I   LG++LLL   A   +L I I  
Sbjct: 64  LDLPVIQQLFAYLNNLAHFSLGISPRYNMPVVSLIGARLGNTLLLMVTALAFALAIGIAA 123

Query: 122 GVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAG---------- 171
           G     R  RW D    + ++++ + P F +GL  ++LF++ L WLP  G          
Sbjct: 124 GTVMATRVGRWQDRTLSVLALLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGAGYTG 183

Query: 172 FGH----PKFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRH 227
           + H     + L+LPALA+A    A+ SR+ R A  +V +  +   A  KGL+      RH
Sbjct: 184 WTHVVDVARHLVLPALAMAGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHPWTVNLRH 243

Query: 228 AQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMG 287
             RN  +PV    G+   +L+ G V++E++FSWPG+G     ++  RD  ++ G  L+  
Sbjct: 244 ILRNALIPVTTVAGMHFGTLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLLGVLLMSS 303

Query: 288 LLFVALNTLVDLVQYALDPRLRL 310
           LL +  N LVDL+   LDPR+++
Sbjct: 304 LLVIVANMLVDLLHAWLDPRIQV 326