Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  153 bits (387), Expect = 5e-42
 Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 13/306 (4%)

Query: 13  LFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFELYLQ 72
           L V   V  L F+L R   GD    +       D   A     V+ E GLD+     +  
Sbjct: 17  LVVLAIVAVLVFVLTRAASGDPVSVLLG-----DQATAADIARVQKEYGLDKPLPVQFGY 71

Query: 73  WLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRW 132
           WL ++L  NLG S+    PV  A+      + LLA  A  ++  I +P G+       R 
Sbjct: 72  WLREVLQGNLGTSIFLQRPVTQALWERSEPTTLLALMAVAIAALIGVPCGIVSAVFRGRV 131

Query: 133 ADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKF--------LILPALA 184
            D L    +++  + P F +G+ L+ +FA+   W PV+G+G P          L+LPA  
Sbjct: 132 VDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAPDAPFAERLHSLVLPATV 191

Query: 185 LALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQA 244
           L L  +A+  R  R +   VL   Y   AR KGL+      +HA RN  +P++  +G+  
Sbjct: 192 LGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHALRNALVPIVTVIGLTV 251

Query: 245 VSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYAL 304
             ++ G V+ E++F  PGVG+ +  A+ +RD P+IQG+ LV+  ++V +N  +DL+   +
Sbjct: 252 ALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINFSIDLLYAVV 311

Query: 305 DPRLRL 310
           DPR+++
Sbjct: 312 DPRVKV 317