Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  179 bits (453), Expect = 1e-49
 Identities = 108/317 (34%), Positives = 163/317 (51%), Gaps = 13/317 (4%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   L  R    L V   V    F+++R  PGD A  I     G    N D    +R +L
Sbjct: 1   MLTFLGKRLLATLPVLLVVAVAIFMIVRLTPGDPAAVIG----GNSATNEDLD-RIRVQL 55

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GL R  +E +  W   +LH +LG S   ++PV   I   +  +L LAG   LL++ IA+P
Sbjct: 56  GLTRPLWEQFAIWCNGVLHGDLGFSFFLNKPVTELIGQRMEPTLSLAGGTLLLAVAIALP 115

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKF--- 177
           +G     R   W D   +  S+   + PVF++G  L+ L A++L W PV G+        
Sbjct: 116 LGTLAAWRMGGWLDKAVMAFSVAGFSVPVFVVGYVLIYLLAMKLQWFPVQGYRRIADGVG 175

Query: 178 -----LILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNI 232
                L+LP L LA+   A+ SR+ R A ++ L   +   AR KG+   +    HA RN 
Sbjct: 176 PWLHQLVLPCLTLAITYVALLSRVTRAAVSEALTEDFIRTARAKGITELEVLKHHALRNA 235

Query: 233 ALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVA 292
           A+PV+  +G+ A  L+ G+V+ E++F+ PG+G     A+  RD P++QG  L   +++VA
Sbjct: 236 AVPVVTVIGVSAALLLGGVVVTETVFAIPGLGQLTVDAVLNRDFPVLQGVVLFFAVVYVA 295

Query: 293 LNTLVDLVQYALDPRLR 309
           +N LVDL    +DPR+R
Sbjct: 296 VNLLVDLSYLFIDPRIR 312