Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  163 bits (412), Expect = 6e-45
 Identities = 101/313 (32%), Positives = 159/313 (50%), Gaps = 14/313 (4%)

Query: 5   LVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDR 64
           +V RF   L V   V  + F+L+   PGD A  IA      D    +    +RA LGL+ 
Sbjct: 4   IVRRFLSTLPVMAVVAVVVFLLIHLSPGDPAALIAG-----DLATTEDIEKLRATLGLNL 58

Query: 65  SAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVY 124
             ++ +  WL  L   +LG S+ +  PV   +   L  ++ +A    L++L +++P+G  
Sbjct: 59  PLWQQFTLWLGKLFTGDLGTSIFTQVPVAQLLGQRLEPTVSIAALTMLITLVVSVPLGTL 118

Query: 125 CGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGH--------PK 176
              R   W D L +L +++  + PVFL+G  LV  FA+QL W PV G+           +
Sbjct: 119 AAYRAGSWIDRLVMLFAVLAFSVPVFLVGYLLVYSFAIQLPWFPVQGYVRLADGAGEWLR 178

Query: 177 FLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPV 236
            L+LP + LAL   A+ +RM R    +VL   Y   AR KGL        HA RN A+P+
Sbjct: 179 SLVLPCVNLALVYIALVTRMTRATVLEVLHEDYIRTARAKGLG-VLPVLGHALRNAAIPI 237

Query: 237 MAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTL 296
              +G     L+ G+V+ E++F+ PGVG  +  ++ + D P+IQ   L+   ++V +N L
Sbjct: 238 ATTIGAGIALLIGGVVVTETVFAIPGVGRLVIDSVQRHDYPVIQSVLLLSAGVYVLINLL 297

Query: 297 VDLVQYALDPRLR 309
           +DL     DPR++
Sbjct: 298 IDLSYRLFDPRIQ 310