Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  163 bits (412), Expect = 6e-45
 Identities = 100/328 (30%), Positives = 165/328 (50%), Gaps = 22/328 (6%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   ++ R  QA+ V  +V  + F+L +++   V + +     G D    D    +RA L
Sbjct: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYVGDPVVFLL-----GQD-AKPDQIRELRAAL 54

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+  F  +  +L +      G SL     V   I      +L LA  A +L+LFI IP
Sbjct: 55  GLDQPFFVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIP 114

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHP----- 175
           +GVY   R   +     +  S++  + P FLIG+ L+++FA+ L W P  G G       
Sbjct: 115 MGVYTALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGW 174

Query: 176 -----------KFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAF 224
                      + ++LPA+ LA+    +  R++R    +VL++ Y  FAR +GL++    
Sbjct: 175 WTSGLFSVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIH 234

Query: 225 TRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSAL 284
             HA +N  +PVM   G+Q   L+   ++ ES+F WPG+G     A+   DIP++     
Sbjct: 235 FGHALKNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAYLC 294

Query: 285 VMGLLFVALNTLVDLVQYALDPRLRLSR 312
           ++ L+FV +N +VDL+ + +DPRLR+ +
Sbjct: 295 LIALIFVVINLVVDLLYFVVDPRLRVGK 322