Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  163 bits (413), Expect = 5e-45
 Identities = 101/326 (30%), Positives = 167/326 (51%), Gaps = 22/326 (6%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           +T  L+ R  QAL V   +  + FI +  I   +   I       + +N    LA  A L
Sbjct: 1   VTGWLLRRVLQALGVVVVMTVIVFIGLHAIGNPIDILIG------EDMNQQERLAAIARL 54

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+  +  YL ++   LH +LG S V  E  +  I+  L  ++ LA AA L+++ + +P
Sbjct: 55  GLDQPLWRQYLAFVDGALHGSLGRSFVYQEDAVRLILQRLPATMELAFAALLMAIVVGVP 114

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPK---- 176
           +G++ G + +       + TSI+  + P F + L L+++F++QL WLP +G G  +    
Sbjct: 115 LGLFAGMKPEHPVSRTLMATSIVGFSLPAFWVALMLIMVFSVQLGWLPASGRGATRELFG 174

Query: 177 ------------FLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAF 224
                        L+LPA  LAL   ++  R+ R    +VL   Y  FAR KGL   +  
Sbjct: 175 VQWSWLTLDGWQHLLLPAFNLALFKISLVLRLTRAGVREVLPQDYVKFARAKGLTPTRVV 234

Query: 225 TRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSAL 284
             H  RN  +P++  +G++  + +   V+ ES+F+WPG G  +  +I   D P++    +
Sbjct: 235 LMHVMRNTMIPLVTVLGLELGATIAYAVVTESIFAWPGAGKLILDSINSLDRPVVVAYLM 294

Query: 285 VMGLLFVALNTLVDLVQYALDPRLRL 310
           V+ ++FV LN +VDL+   LDPR+RL
Sbjct: 295 VVVVIFVTLNLIVDLLYKLLDPRVRL 320