Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  176 bits (445), Expect = 9e-49
 Identities = 102/314 (32%), Positives = 170/314 (54%), Gaps = 12/314 (3%)

Query: 3   KILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALA-VRAELG 61
           + ++ R  Q L V + +  +TFIL+R IPGD A  +   R      +   ALA +RA+ G
Sbjct: 7   RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARMLLGSR------STPQALANIRAQYG 60

Query: 62  LDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPI 121
           LD   +  Y+ ++ +L+  ++G SL+    V+  I   +  ++ L   + LL+L IA+P+
Sbjct: 61  LDEPLWTQYVYFMKNLVQGDMGKSLLYKIDVLKLISTRIEPTVFLVSGSVLLALLIAVPL 120

Query: 122 GVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHP-----K 176
                +    W+DNL  + +      P F +G+ L++LF++QL W PV+G+G        
Sbjct: 121 ATLAARNKGSWSDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFPVSGYGSDWLDKAH 180

Query: 177 FLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPV 236
            L+LP L +AL ++A+  R +R +    LQ+ +   AR +GL+    F RH   N  +P 
Sbjct: 181 HLVLPCLTIALALSAVLIRNLRASMLVELQADHVTAARARGLSEGALFRRHVLPNSLVPS 240

Query: 237 MAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTL 296
           +  + +    L+ G V+IESLF+ PG+G  L   IF RD  ++QG A+V+    V +N L
Sbjct: 241 INLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFL 300

Query: 297 VDLVQYALDPRLRL 310
            D+   A+DPR+ +
Sbjct: 301 ADVATVAIDPRVNI 314