Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  172 bits (435), Expect = 1e-47
 Identities = 102/310 (32%), Positives = 164/310 (52%), Gaps = 6/310 (1%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   L+ R   AL VA +V  ++F L+  + GD+A  I     G    +++    +R + 
Sbjct: 1   MFGFLLRRLGIALCVAITVSVISFSLLH-LSGDLATAI-----GGPEASSEQIEQIRVQY 54

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GL++     Y +WL D++ L+LG S    E V + I   L  +L L   A  ++L IAIP
Sbjct: 55  GLNKPLVTQYFEWLADVVRLDLGDSFFFQESVYNLIASRLSITLGLGAMALSIALLIAIP 114

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLIL 180
           +GV    + D W D LAL  +++ +A P F   L L+++F++ L WLPV+G       ++
Sbjct: 115 LGVLAAVKRDTWIDRLALSIAVLGQAMPSFWFALMLIVVFSVTLKWLPVSGNSTWAHFVM 174

Query: 181 PALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFV 240
           PA+AL         R+ R     VL S Y   AR KGL       +HA RN  +PV+A  
Sbjct: 175 PAIALGYYATPAIMRLTRAGMLDVLNSDYIRTARAKGLRPATVLFKHALRNALIPVVALA 234

Query: 241 GIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLV 300
            ++   ++ G V+IE++FS  G+G     AI + D P++Q   L++ ++++ L  L D++
Sbjct: 235 AVEFGFMLGGSVVIETVFSLQGIGQLAWDAIARDDFPVVQAVVLLIAVIYIVLTLLADVL 294

Query: 301 QYALDPRLRL 310
              LDPR+R+
Sbjct: 295 NALLDPRIRV 304