Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  181 bits (458), Expect = 3e-50
 Identities = 113/312 (36%), Positives = 162/312 (51%), Gaps = 7/312 (2%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGD-VAYRIAAGRYGYDYVNADAALAVRAE 59
           M + L+ R  QAL V W   T+T+ ++  +PGD +A  ++A     D ++ +     R  
Sbjct: 1   MRRYLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTY 60

Query: 60  LGLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAI 119
            GLD+  FE Y   LW  LH +LG SL    PV   +   L  +L LAGAA  LSL   +
Sbjct: 61  YGLDKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGV 120

Query: 120 PIGVYCGKRTDRWAD---NLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPK 176
             G+ C     +W      LA L S+     PVF +GL L+ +FA  L W P  G     
Sbjct: 121 --GLACLTAYLQWRPLKTALARLPSLGFSV-PVFWMGLLLIQVFAFALGWFPATGSQGLA 177

Query: 177 FLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPV 236
            L+LPA+ LA+  AA+ +++++     V Q PY   A  KGL+  Q   RH  RN ALP+
Sbjct: 178 SLVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQARHGLRNAALPL 237

Query: 237 MAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTL 296
           +  VG+Q  + V G V++E++FS  GVG     A+ ++DIP++          FV +N L
Sbjct: 238 LTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGASAAAFVVVNLL 297

Query: 297 VDLVQYALDPRL 308
           VDL    LDPR+
Sbjct: 298 VDLFYPYLDPRI 309