Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  154 bits (388), Expect = 4e-42
 Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 35/340 (10%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M + ++ R    +     +  LTF  +  IPGD    I AG  G   ++ +    + AEL
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVM-IMAGERG---ISPERHAQLLAEL 56

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+  ++ YL ++W ++H +LG SL S  PV    +     +L L   A + ++ + IP
Sbjct: 57  GLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIP 116

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAG--------- 171
           +GV    +     D+ A+  ++   + P+F  G+ L++L ++  N  PV+G         
Sbjct: 117 VGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLD 176

Query: 172 ---------------FGHP-------KFLILPALALALGMAAMSSRMIRNATAQVLQSPY 209
                          +G           +ILPA+ L     A+  RM R++  +VL   Y
Sbjct: 177 DTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDY 236

Query: 210 YAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSH 269
              AR KGL   +    HA RN  LPV+  +G+Q  +L+ G ++ E++FSWPG+G  L  
Sbjct: 237 IRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLID 296

Query: 270 AIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYALDPRLR 309
           A+ +RD P++QG  L++  + + +N LVDL+   ++PR+R
Sbjct: 297 ALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336