Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter, membrane subunit (DppB) (from data) from Escherichia coli BW25113

 Score =  152 bits (385), Expect = 8e-42
 Identities = 98/340 (28%), Positives = 166/340 (48%), Gaps = 35/340 (10%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M + ++ R    +     +  LTF  +  IPGD    I AG  G   ++ +    + AEL
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVM-IMAGERG---ISPERHAQLLAEL 56

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+  ++ YL ++W ++H +LG S+ S  PV    +     +L L   A + +  + IP
Sbjct: 57  GLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIP 116

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAG--------- 171
           +GV    +     D+ A+  ++   + P+F  G+ L++L ++  N  PV+G         
Sbjct: 117 VGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLD 176

Query: 172 ----------------------FGHPKFLILPALALALGMAAMSSRMIRNATAQVLQSPY 209
                                       +ILPA+ L     A+  RM R++  +VL   Y
Sbjct: 177 DSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDY 236

Query: 210 YAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSH 269
              AR KGL   +    HA RN  LPV+  +G+Q  +L+ G ++ E++FSWPG+G  L  
Sbjct: 237 IRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLID 296

Query: 270 AIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYALDPRLR 309
           A+ +RD P++QG  L++  + + +N LVDL+   ++PR+R
Sbjct: 297 ALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336