Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  159 bits (403), Expect = 6e-44
 Identities = 89/293 (30%), Positives = 157/293 (53%), Gaps = 9/293 (3%)

Query: 19  VGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALA--VRAELGLDRSAFELYLQWLWD 76
           V  L F+ +  +PGD A R+ AG        ADA +   VR +LGLD+  +  ++ ++ +
Sbjct: 19  VAVLVFLFVHMLPGDPA-RLVAGP------EADATVIDLVRKQLGLDQPLYMQFIHYICN 71

Query: 77  LLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRWADNL 136
           +L  + G S+VS  PV   I      +  L  A+   ++   +  G+      +RW D L
Sbjct: 72  VLQGDFGISMVSRRPVSEEIASRFMPTFWLTIASMCWAVVFGLGAGIIAAVWRNRWPDKL 131

Query: 137 ALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLILPALALALGMAAMSSRM 196
            +  ++   + P F +G+ L+ +F+++L WLP  G    K  ILP++ L   ++A+ +R 
Sbjct: 132 GMALAVTGISFPAFALGMLLMQIFSVELGWLPTVGADTWKHYILPSMTLGAAVSAVMARF 191

Query: 197 IRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQAVSLVEGIVMIES 256
            R +   VL   Y   AR KG++ +    +H  RN  +PV+  +G+Q   L+ G +++E 
Sbjct: 192 TRASFVDVLSEDYIRTARAKGVSEKWVILKHGFRNAMIPVVTMMGLQFGFLLGGSIVVEK 251

Query: 257 LFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYALDPRLR 309
           +F+WPG+G  L  ++  RD P+IQ   L+  L F+ +N +VD++  A++P +R
Sbjct: 252 VFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304