Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., nickel ABC transporter permease subunit NikB from Escherichia coli ECRC62

 Score =  194 bits (493), Expect = 2e-54
 Identities = 107/309 (34%), Positives = 174/309 (56%), Gaps = 2/309 (0%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M + ++ RF   + +  +   + F+++R   GD A      R        +   + R  L
Sbjct: 1   MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYL--RLSNLPPTPEMLASTRTML 58

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+  +  Y  WLW  LHL+ G S  S  PV+  +++ L  +L LAGAA +L L  ++P
Sbjct: 59  GLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVP 118

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLIL 180
           +G++  +  DR  D      + +  + P F +   LV+ F++ L WLP  G+G  + +IL
Sbjct: 119 LGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIIL 178

Query: 181 PALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFV 240
           PA+++A    A+++R++R +   V    +  +ARL+GLN +Q   RH  RN +LP++  V
Sbjct: 179 PAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAV 238

Query: 241 GIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLV 300
           G+    L+ G ++IE++F+WPGVG     AIF RD P+IQ   L+M ++FV  N +VDL+
Sbjct: 239 GMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLL 298

Query: 301 QYALDPRLR 309
             ALDPR+R
Sbjct: 299 NAALDPRIR 307