Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Dickeya dianthicola ME23

 Score =  155 bits (391), Expect = 2e-42
 Identities = 102/340 (30%), Positives = 170/340 (50%), Gaps = 35/340 (10%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M + ++ R    +     +  LTF  +  IPGD    I AG  G   ++ +    + AEL
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHLIPGDPVM-IMAGERG---ISPERHAQLMAEL 56

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+  ++ YL ++  +LH +LG SL S  PV    +     +L L   A + ++ + IP
Sbjct: 57  GLDKPLWDQYLHYINGVLHGDLGMSLKSRIPVWDEFVPRFKATLELGVCAMIFAVIVGIP 116

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAG-FGHPKFL- 178
           +GV    +     D+ A+  ++   + P+F  G+ L++L ++QLN  PV+G  G   FL 
Sbjct: 117 VGVLAAVKRGSVFDHTAVSIALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVGDTVFLD 176

Query: 179 -----------------------------ILPALALALGMAAMSSRMIRNATAQVLQSPY 209
                                        +LPA+ L     A+  RM R+A  +VL   Y
Sbjct: 177 DALPLSGFMLIDTLIWGADGDFKDAVMHMVLPAVVLGTIPLAVIVRMTRSAMLEVLGEDY 236

Query: 210 YAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSH 269
              AR KGL+  +    HA RN  LPV+  +G+Q  +++ G ++ E++FSWPG+G  L  
Sbjct: 237 IRTARAKGLSRLRVIVVHALRNAMLPVVTVIGLQVGTMLAGAILTETIFSWPGLGRWLID 296

Query: 270 AIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYALDPRLR 309
           A+ +RD P++Q   L++  + + +N LVDL+   ++PR+R
Sbjct: 297 ALQRRDYPVVQSGVLLVATMIILVNLLVDLLYGVVNPRIR 336