Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., ABC transporter, membrane spanning protein (agrocinopine) from Agrobacterium fabrum C58

 Score =  155 bits (391), Expect = 2e-42
 Identities = 96/313 (30%), Positives = 157/313 (50%), Gaps = 6/313 (1%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   ++ R  +A+ V     T  FI++R + GD A  +       +    +A  A R   
Sbjct: 1   MISFILARLVRAIIVMMLTVTFVFIILR-LGGDPARAMLG-----ENATPEALAAFRTAW 54

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLDRS  E +L +L   L  + G S      V   I   +  +L L  +A +LS+ + IP
Sbjct: 55  GLDRSIPEQFLIYLASALRGDFGVSAADGREVFTVISERIPKTLTLTISAFVLSILVGIP 114

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLIL 180
            G+    R D  AD   +  +++  + P FL+GL L+ +FA+    LP +G    +  IL
Sbjct: 115 AGIIAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTWQHAIL 174

Query: 181 PALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFV 240
           P     L  AA  +R  R+A  +VL+ PY A AR  G+   +   RHA  N A+P++  +
Sbjct: 175 PVATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPKWEVVIRHALPNAAIPMVTML 234

Query: 241 GIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLV 300
           G  A  L+ G  ++E++F+WPG+G     AI   D+ ++Q   L+     V +N +VD++
Sbjct: 235 GFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTAFMVTINLIVDVL 294

Query: 301 QYALDPRLRLSRH 313
              L+P++RL ++
Sbjct: 295 YAVLNPKIRLQKN 307