Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  159 bits (402), Expect = 9e-44
 Identities = 98/327 (29%), Positives = 160/327 (48%), Gaps = 31/327 (9%)

Query: 5   LVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALA-------VR 57
           L+    QA+   + + TL F +++  PGD A          DY+ A++  A       +R
Sbjct: 16  LLRNLIQAVPTMFVIVTLGFFVLQLAPGDAA----------DYMAAESGAATQETVADIR 65

Query: 58  AELGLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFI 117
              GLD    +    +   L H +LG S     PV   IM  L  +L L   A +++L +
Sbjct: 66  RAFGLDLPLLDQLANYYTSLAHFSLGISPRYGVPVADLIMERLPGTLTLMVLAIVIALLV 125

Query: 118 AIPIGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAG------ 171
            I  G        R AD +  + S++  + P F IGL  +I+F+++L WLP  G      
Sbjct: 126 GIAAGTIMALNATRAADRILSVASLLFYSVPTFWIGLIFIIVFSVKLGWLPAGGMKTIGA 185

Query: 172 ----FG----HPKFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQA 223
               FG       + +LPA +LAL   A+ +R+ R++  +V+   +   A+ KGL   Q 
Sbjct: 186 SSGGFGWLIDRVSYALLPATSLALYYMAIYARLTRSSILEVIGQDHVRTAKAKGLAPRQV 245

Query: 224 FTRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSA 283
             RH  RN  +P+    GI    ++ G ++IE++FSWPG+G     A+  R+  ++ G  
Sbjct: 246 VLRHVLRNALIPITTVAGIHVAGILGGAIVIETVFSWPGMGRLAFDAVMAREYTLLLGIM 305

Query: 284 LVMGLLFVALNTLVDLVQYALDPRLRL 310
           LV  +L + +N +VD++Q ALDPR+ +
Sbjct: 306 LVSSVLVICVNAIVDIIQAALDPRIEV 332