Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., ABC transporter membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  163 bits (413), Expect = 4e-45
 Identities = 99/316 (31%), Positives = 170/316 (53%), Gaps = 22/316 (6%)

Query: 11  QALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFELY 70
           QA+ VA ++  + F+ +  I   +   +            D  L + A+LGLDR  +E +
Sbjct: 2   QAILVALAMALIVFVGLHLIGSPIETLLPPE------ATYDDRLRLIADLGLDRPLYEQF 55

Query: 71  LQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTD 130
             +L  LL  NLG S V  EP +  I+  L  +L LA AA LLSL + +P+G+  G + +
Sbjct: 56  FLFLKGLLQGNLGVSYVYKEPAVELILSRLPATLELAFAAVLLSLIVGVPLGLAAGWKPE 115

Query: 131 RWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAG-------FGHP-------- 175
                + ++ SI   + P+F I + L+++F++QL WLP +G       FG P        
Sbjct: 116 SPLARIIMIGSIFGFSLPIFWIAVLLIMIFSVQLGWLPSSGRGATEILFGIPWSFVTLDG 175

Query: 176 -KFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIAL 234
            + ++LPA++L+L   +M +R+      + + S Y  FAR KGL+ ++  + H  +N+ +
Sbjct: 176 LRHMLLPAISLSLFNISMVTRLTEAGVREAMSSEYVRFARAKGLSPKRILSVHVLKNVMI 235

Query: 235 PVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALN 294
           PV+  VG+     +   V+ E++F+WPGVG  +  +I   D P+I    +++ ++FV +N
Sbjct: 236 PVVTVVGLDIGQTIAFSVVTETIFAWPGVGKIIIDSIAALDRPVIVAYLMLVVVMFVIIN 295

Query: 295 TLVDLVQYALDPRLRL 310
            +VD+    LDPR+RL
Sbjct: 296 LVVDVTYRLLDPRIRL 311