Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  153 bits (386), Expect = 6e-42
 Identities = 95/328 (28%), Positives = 160/328 (48%), Gaps = 22/328 (6%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   ++ R   A+ V  SV  + F++ R     V   +       +  + +   A+R  L
Sbjct: 1   MLVFIIKRLGNAVLVMLSVALIAFLIFRLAGDPVELMVG------EQTSQEDRAALRERL 54

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GL+ S    YL+++ D    N G S  + + V+  I      +L L   AT++SL + +P
Sbjct: 55  GLNDSLPTQYLRFVKDAAQGNFGVSYRNGQQVLPLIAERFPATLELVLVATVISLVVGLP 114

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHP----- 175
           +GV    R  +W        SI+  + P F++G+ L+++F++ L W P  G G       
Sbjct: 115 LGVLTAIRRGKWYTEGLQFLSIVGVSLPSFVVGILLILVFSVSLGWAPAFGRGDVVQLGW 174

Query: 176 -----------KFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAF 224
                        LILPA+AL+L    +  R++R    +VL+S +  FAR +G+   + +
Sbjct: 175 WSTGLLTSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIY 234

Query: 225 TRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSAL 284
            RHA RN  +PV+    +   SL+   ++ E++F WPG+G     A+   DIP++     
Sbjct: 235 FRHALRNCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLC 294

Query: 285 VMGLLFVALNTLVDLVQYALDPRLRLSR 312
           ++  +FV LNT VD+    +DPRLR +R
Sbjct: 295 IISFIFVVLNTFVDIAYAVIDPRLRTAR 322