Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  173 bits (439), Expect = 4e-48
 Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 13/317 (4%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M  +L+ R    +   ++V  + +++M  +PGD A  I  G       + D   A++ ++
Sbjct: 1   MLAVLIRRLVSLIITLFAVSLIIYVVMGLLPGDPA-AIMLGTSA----SPDTLAALQKQM 55

Query: 61  GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIP 120
           GLD+     YL WL  +   +LG S     PV   I+  L  +L LA  A  LS+ IAIP
Sbjct: 56  GLDQPLPLRYLHWLAGVFRGDLGQSYTYGVPVAGLIIERLAVTLPLALLAIFLSVTIAIP 115

Query: 121 IGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFG--HPKF- 177
           +GV   +  +   D  A L S +  A P F +GL L+I+F+  L W+P  GF    P F 
Sbjct: 116 LGVAAAQNRNGALDFAAGLFSHVGIAVPGFWVGLLLIIVFSTTLGWMPSGGFPGWSPSFS 175

Query: 178 -----LILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNI 232
                L+LPA+ALAL  A + +R+ R+A  +V+   +   AR KGL+   A  RHA  N 
Sbjct: 176 AGLVALVLPAIALALSQAGVLTRVCRSAVLEVMNEDFVRTARAKGLSERVALWRHAVPNA 235

Query: 233 ALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVA 292
            +PV+  +G+Q   L+ G V++E++F+ PG+G     A+ QRDI ++Q   L    L + 
Sbjct: 236 MIPVVTMIGLQFTFLIAGAVLVENVFNLPGLGRLAYQALTQRDIVVMQSVVLFFSALVII 295

Query: 293 LNTLVDLVQYALDPRLR 309
           +N +VD+    +DPRLR
Sbjct: 296 MNFVVDIAYLFIDPRLR 312