Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  151 bits (382), Expect = 2e-41
 Identities = 95/316 (30%), Positives = 164/316 (51%), Gaps = 32/316 (10%)

Query: 22  LTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFELYLQWLWDLLHLN 81
           + F  +R +PGD    + AG  G   ++ +    +  +LG  +  +E YL +L  LL  +
Sbjct: 22  VAFAFVRVLPGDPVL-LMAGERG---ISPERHAQLAEQLGFAQPIWEQYLHFLGRLLQGD 77

Query: 82  LGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRWADNLALLTS 141
           LG+SLV+ +PV+   +     ++ L   A +++  I +P+GV    R   W D +++ T+
Sbjct: 78  LGNSLVTKKPVLTEFLALFPATVELGLVAIIIATVIGVPVGVIAAIRRGSWFDQISMTTA 137

Query: 142 IMIKAQPVFLIGLGLVILFALQLNWLPVAG-----FGHP--------------------- 175
           ++  + P+F  GL L+I+F+  L W PV+G     +  P                     
Sbjct: 138 LVGFSMPIFWWGLLLIIMFSGILQWTPVSGRISLMYFFPSVTGFMLIDSLISGQKGAFAS 197

Query: 176 --KFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIA 233
               LILP++ LA    A+ +R  R+A  +VL   Y   AR KG++  +    HA RN  
Sbjct: 198 ALSHLILPSVVLATIPLAVIARQTRSAMLEVLGEDYVRTARAKGMSASRVVGIHALRNAM 257

Query: 234 LPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVAL 293
           +PV+  +G+Q   L+ G ++ E++FSWPG+G  +  +I +RD P++Q   L++  L + +
Sbjct: 258 IPVITTIGLQIGVLMAGAILTETIFSWPGIGKWMIDSISRRDYPVVQSGLLLIAGLVMVV 317

Query: 294 NTLVDLVQYALDPRLR 309
           N LVDL    ++PR+R
Sbjct: 318 NLLVDLTYGLINPRIR 333