Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  168 bits (425), Expect = 2e-46
 Identities = 102/305 (33%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 13  LFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFELYLQ 72
           + V + V T+ F+++R  PGD A    A   G D    D A  +R  LGLD+S    Y+ 
Sbjct: 2   IVVMFLVVTIVFVILRVTPGDPA----AVMLGPDATAQDIA-ELRTRLGLDQSLGVQYVY 56

Query: 73  WLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRW 132
           ++  LL  +LG S+  + PV  A++     +  L   + L++  IA+PIG+Y   R   +
Sbjct: 57  YIGQLLKGDLGQSIFLNMPVGSALLDRAEPTFFLTIFSLLIAGVIALPIGIYAAYRRGSF 116

Query: 133 ADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPK--------FLILPALA 184
            D  A   +++  + P F +GL L+  FA++L+  PV+G+G P          L LPA+A
Sbjct: 117 VDQAATTIAMLAASIPSFWLGLILMQFFAVRLDLFPVSGYGGPGASFLERMYHLTLPAIA 176

Query: 185 LALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQA 244
           L L  +A+  R  R +   VL   Y   AR KG+   +   +HA +N  +P++  +G+ A
Sbjct: 177 LGLVSSALILRFTRASMLDVLGDDYVRTARAKGVKERRVVMKHALKNALIPILTVLGLTA 236

Query: 245 VSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYAL 304
             L+ G V+ E++F  PGVG+ +  A+ +RD P+IQG+ LV+  L+V +N  +D++   +
Sbjct: 237 AVLISGAVVTETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAGLYVLINFAIDMLYLLV 296

Query: 305 DPRLR 309
           DPR+R
Sbjct: 297 DPRVR 301