Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  160 bits (406), Expect = 3e-44
 Identities = 105/323 (32%), Positives = 162/323 (50%), Gaps = 25/323 (7%)

Query: 4   ILVHRFYQALFVAWSVGTLTFILMRFIPGDV--AYRIAAGRYGYDYVNADAAL--AVRAE 59
           +L  R   A+ V   V   TF+L+    GD   AY ++ G         DA L  A+R +
Sbjct: 7   LLRRRAISAIPVLLIVLIFTFVLLENASGDAVDAYLVSIG-------GGDAGLRDALREQ 59

Query: 60  LGLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAI 119
            GL+ S    +  +   +L L+ G SL    PV+  I+  L ++LLL G+AT L+  +  
Sbjct: 60  YGLNGSMLARFWLYASSVLRLDFGWSLAFDRPVLGLILERLPNTLLLMGSATALAFILGT 119

Query: 120 PIGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGF-----GH 174
            +G+  G R     D +    S+ + A P F +GL L I+FA+QL WLP +G      G 
Sbjct: 120 TLGIVAGARPGGLMDRVLSTLSLALYATPGFWLGLVLAIVFAVQLRWLPTSGIETIASGK 179

Query: 175 PKF---------LILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFT 225
             F         L+LP  +L L   A+  R++R A A +    +  FA  KGL+  +   
Sbjct: 180 QGFARALDIARHLVLPVASLGLIYLALFLRVMRTAMAAIWPLDFVLFAEAKGLSRRRIVL 239

Query: 226 RHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALV 285
           RH  RN ALP++  +G+QA +++ G V+IES+F+ PG G     A+  RD P++ G  L 
Sbjct: 240 RHVARNAALPLVTVLGLQAATMLGGSVVIESVFAIPGFGRLAQEAVSGRDTPLLMGIILT 299

Query: 286 MGLLFVALNTLVDLVQYALDPRL 308
             +  + +N  VD++    DPR+
Sbjct: 300 SAVFVILVNLAVDILYAVFDPRI 322